Searching journal content for E D Green in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  3. In memoriam: C. Thomas Caskey (1938–2022)
    • Richard A. Gibbs,
    • Aravinda Chakravarti,
    • Evan E. Eichler,
    • Eric D. Green,
    • Richard M. Myers,
    • Anne C. Ferguson-Smith,
    • Kateryna D. Makova,
    • and Hillary E. Sussman
    Genome Res. March 2022 32: vii-viii; Published in Advance February 17, 2022, doi:10.1101/gr.276658.122
    OPEN ACCESS ARTICLE
  4. In memoriam: Deborah A. Nickerson (1954 –2021)
    • Aravinda Chakravarti,
    • Evan E. Eichler,
    • Richard A. Gibbs,
    • Eric D. Green,
    • Richard M. Myers,
    • and Hillary E. Sussman
    Genome Res. February 2022 32: v-vi; Published in Advance January 24, 2022, doi:10.1101/gr.276582.122
    OPEN ACCESS ARTICLE
  5. Research: Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
    • Nathan H. Lazar,
    • Kimberly A. Nevonen,
    • Brendan O'Connell,
    • Christine McCann,
    • Rachel J. O'Neill,
    • Richard E. Green,
    • Thomas J. Meyer,
    • Mariam Okhovat,
    • and Lucia Carbone
    Genome Res. July 2018 28: 983-997; Published in Advance June 18, 2018, doi:10.1101/gr.233874.117
  6. Research: Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
    • Edward S. Rice,
    • Satomi Kohno,
    • John St. John,
    • Son Pham,
    • Jonathan Howard,
    • Liana F. Lareau,
    • Brendan L. O'Connell,
    • Glenn Hickey,
    • Joel Armstrong,
    • Alden Deran,
    • Ian Fiddes,
    • Roy N. Platt II,
    • Cathy Gresham,
    • Fiona McCarthy,
    • Colin Kern,
    • David Haan,
    • Tan Phan,
    • Carl Schmidt,
    • Jeremy R. Sanford,
    • David A. Ray,
    • Benedict Paten,
    • Louis J. Guillette, Jr.,
    • and Richard E. Green
    Genome Res. May 2017 27: 686-696; Published in Advance January 30, 2017, doi:10.1101/gr.213595.116
  7. Method: Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
    • Nicholas H. Putnam,
    • Brendan L. O'Connell,
    • Jonathan C. Stites,
    • Brandon J. Rice,
    • Marco Blanchette,
    • Robert Calef,
    • Christopher J. Troll,
    • Andrew Fields,
    • Paul D. Hartley,
    • Charles W. Sugnet,
    • David Haussler,
    • Daniel S. Rokhsar,
    • and Richard E. Green
    Genome Res. March 2016 26: 342-350; Published in Advance February 4, 2016, doi:10.1101/gr.193474.115
    OPEN ACCESS ARTICLE
  8. Resource: Assemblathon 1: A competitive assessment of de novo short read assembly methods
    • Dent Earl,
    • Keith Bradnam,
    • John St. John,
    • Aaron Darling,
    • Dawei Lin,
    • Joseph Fass,
    • Hung On Ken Yu,
    • Vince Buffalo,
    • Daniel R. Zerbino,
    • Mark Diekhans,
    • Ngan Nguyen,
    • Pramila Nuwantha Ariyaratne,
    • Wing-Kin Sung,
    • Zemin Ning,
    • Matthias Haimel,
    • Jared T. Simpson,
    • Nuno A. Fonseca,
    • İnanç Birol,
    • T. Roderick Docking,
    • Isaac Y. Ho,
    • Daniel S. Rokhsar,
    • Rayan Chikhi,
    • Dominique Lavenier,
    • Guillaume Chapuis,
    • Delphine Naquin,
    • Nicolas Maillet,
    • Michael C. Schatz,
    • David R. Kelley,
    • Adam M. Phillippy,
    • Sergey Koren,
    • Shiaw-Pyng Yang,
    • Wei Wu,
    • Wen-Chi Chou,
    • Anuj Srivastava,
    • Timothy I. Shaw,
    • J. Graham Ruby,
    • Peter Skewes-Cox,
    • Miguel Betegon,
    • Michelle T. Dimon,
    • Victor Solovyev,
    • Igor Seledtsov,
    • Petr Kosarev,
    • Denis Vorobyev,
    • Ricardo Ramirez-Gonzalez,
    • Richard Leggett,
    • Dan MacLean,
    • Fangfang Xia,
    • Ruibang Luo,
    • Zhenyu Li,
    • Yinlong Xie,
    • Binghang Liu,
    • Sante Gnerre,
    • Iain MacCallum,
    • Dariusz Przybylski,
    • Filipe J. Ribeiro,
    • Shuangye Yin,
    • Ted Sharpe,
    • Giles Hall,
    • Paul J. Kersey,
    • Richard Durbin,
    • Shaun D. Jackman,
    • Jarrod A. Chapman,
    • Xiaoqiu Huang,
    • Joseph L. DeRisi,
    • Mario Caccamo,
    • Yingrui Li,
    • David B. Jaffe,
    • Richard E. Green,
    • David Haussler,
    • Ian Korf,
    • and Benedict Paten
    Genome Res. December 2011 21: 2224-2241; Published in Advance September 16, 2011, doi:10.1101/gr.126599.111
    OPEN ACCESS ARTICLE
  9. Research: Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus
    • Julie E. Horvath,
    • Christina B. Sheedy,
    • Stephanie L. Merrett,
    • Abdoulaye Banire Diallo,
    • David L. Swofford,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • and Huntington F. Willard
    Genome Res. June 2011 21: 850-862; Published in Advance April 25, 2011, doi:10.1101/gr.111849.110
  10. Method: Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
    • Jamie K. Teer,
    • Lori L. Bonnycastle,
    • Peter S. Chines,
    • Nancy F. Hansen,
    • Natsuyo Aoyama,
    • Amy J. Swift,
    • Hatice Ozel Abaan,
    • Thomas J. Albert,
    • NISC Comparative Sequencing Program,
    • Elliott H. Margulies,
    • Eric D. Green,
    • Francis S. Collins,
    • James C. Mullikin,
    • and Leslie G. Biesecker
    Genome Res. October 2010 20: 1420-1431; Published in Advance September 1, 2010, doi:10.1101/gr.106716.110
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