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Donna M. Muzny
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Displaying results 1-10 of
16
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Research
:
Sequence analysis in
Bos taurus
reveals pervasiveness of X–Y arms races in mammalian lineages
Jennifer F. Hughes
,
Helen Skaletsky
,
Tatyana Pyntikova
,
Natalia Koutseva
,
Terje Raudsepp
,
Laura G. Brown
,
Daniel W. Bellott
,
Ting-Jan Cho
,
Shannon Dugan-Rocha
,
Ziad Khan
,
Colin Kremitzki
,
Catrina Fronick
,
Tina A. Graves-Lindsay
,
Lucinda Fulton
,
Wesley C. Warren
,
Richard K. Wilson
,
Elaine Owens
,
James E. Womack
,
William J. Murphy
,
Donna M. Muzny
,
Kim C. Worley
,
Bhanu P. Chowdhary
,
Richard A. Gibbs
,
and
David C. Page
Genome Res.
December 2020
30
:
1716
-
1726
;
Published in Advance
November 18, 2020
,
doi:
10.1101/gr.269902.120
Abstract
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Research
:
Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
Richard J. Wang
,
Gregg W.C. Thomas
,
Muthuswamy Raveendran
,
R. Alan Harris
,
Harshavardhan Doddapaneni
,
Donna M. Muzny
,
John P. Capitanio
,
Predrag Radivojac
,
Jeffrey Rogers
,
and
Matthew W. Hahn
Genome Res.
June 2020
30
:
826
-
834
;
Published in Advance
May 27, 2020
,
doi:
10.1101/gr.255174.119
Abstract
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Research
:
The population genomics of rhesus macaques (
Macaca mulatta
) based on whole-genome sequences
Cheng Xue
,
Muthuswamy Raveendran
,
R. Alan Harris
,
Gloria L. Fawcett
,
Xiaoming Liu
,
Simon White
,
Mahmoud Dahdouli
,
David Rio Deiros
,
Jennifer E. Below
,
William Salerno
,
Laura Cox
,
Guoping Fan
,
Betsy Ferguson
,
Julie Horvath
,
Zach Johnson
,
Sree Kanthaswamy
,
H. Michael Kubisch
,
Dahai Liu
,
Michael Platt
,
David G. Smith
,
Binghua Sun
,
Eric J. Vallender
,
Feng Wang
,
Roger W. Wiseman
,
Rui Chen
,
Donna M. Muzny
,
Richard A. Gibbs
,
Fuli Yu
,
and
Jeffrey Rogers
Genome Res.
December 2016
26
:
1651
-
1662
;
Published in Advance
October 17, 2016
,
doi:
10.1101/gr.204255.116
Abstract
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Research
:
Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young
D. Nicole R. Methner
,
Steven E. Scherer
,
Katherine Welch
,
Magdalena Walkiewicz
,
Christine M. Eng
,
John W. Belmont
,
Mark C. Powell
,
Viktoriya Korchina
,
Harsha Vardhan Doddapaneni
,
Donna M. Muzny
,
Richard A. Gibbs
,
Dwayne A. Wolf
,
Luis A. Sanchez
,
and
Roger Kahn
Genome Res.
September 2016
26
:
1170
-
1177
;
Published in Advance
July 19, 2016
,
doi:
10.1101/gr.195800.115
Abstract
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Research
:
Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
Eve Shinbrot
,
Erin E. Henninger
,
Nils Weinhold
,
Kyle R. Covington
,
A. Yasemin Göksenin
,
Nikolaus Schultz
,
Hsu Chao
,
HarshaVardhan Doddapaneni
,
Donna M. Muzny
,
Richard A. Gibbs
,
Chris Sander
,
Zachary F. Pursell
,
and
David A. Wheeler
Genome Res.
November 2014
24
:
1740
-
1750
;
Published in Advance
September 16, 2014
,
doi:
10.1101/gr.174789.114
Abstract
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Resource
:
Comparative validation of the
D. melanogaster
modENCODE transcriptome annotation
Zhen-Xia Chen
,
David Sturgill
,
Jiaxin Qu
,
Huaiyang Jiang
,
Soo Park
,
Nathan Boley
,
Ana Maria Suzuki
,
Anthony R. Fletcher
,
David C. Plachetzki
,
Peter C. FitzGerald
,
Carlo G. Artieri
,
Joel Atallah
,
Olga Barmina
,
James B. Brown
,
Kerstin P. Blankenburg
,
Emily Clough
,
Abhijit Dasgupta
,
Sai Gubbala
,
Yi Han
,
Joy C. Jayaseelan
,
Divya Kalra
,
Yoo-Ah Kim
,
Christie L. Kovar
,
Sandra L. Lee
,
Mingmei Li
,
James D. Malley
,
John H. Malone
,
Tittu Mathew
,
Nicolas R. Mattiuzzo
,
Mala Munidasa
,
Donna M. Muzny
,
Fiona Ongeri
,
Lora Perales
,
Teresa M. Przytycka
,
Ling-Ling Pu
,
Garrett Robinson
,
Rebecca L. Thornton
,
Nehad Saada
,
Steven E. Scherer
,
Harold E. Smith
,
Charles Vinson
,
Crystal B. Warner
,
Kim C. Worley
,
Yuan-Qing Wu
,
Xiaoyan Zou
,
Peter Cherbas
,
Manolis Kellis
,
Michael B. Eisen
,
Fabio Piano
,
Karin Kionte
,
David H. Fitch
,
Paul W. Sternberg
,
Asher D. Cutter
,
Michael O. Duff
,
Roger A. Hoskins
,
Brenton R. Graveley
,
Richard A. Gibbs
,
Peter J. Bickel
,
Artyom Kopp
,
Piero Carninci
,
Susan E. Celniker
,
Brian Oliver
,
and
Stephen Richards
Genome Res.
July 2014
24
:
1209
-
1223
;
Published in Advance
July 1, 2014
,
doi:
10.1101/gr.159384.113
Abstract
Full Text
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Resource
:
Natural variation in genome architecture among 205
Drosophila melanogaster
Genetic Reference Panel lines
Wen Huang
,
Andreas Massouras
,
Yutaka Inoue
,
Jason Peiffer
,
Miquel Ràmia
,
Aaron M. Tarone
,
Lavanya Turlapati
,
Thomas Zichner
,
Dianhui Zhu
,
Richard F. Lyman
,
Michael M. Magwire
,
Kerstin Blankenburg
,
Mary Anna Carbone
,
Kyle Chang
,
Lisa L. Ellis
,
Sonia Fernandez
,
Yi Han
,
Gareth Highnam
,
Carl E. Hjelmen
,
John R. Jack
,
Mehwish Javaid
,
Joy Jayaseelan
,
Divya Kalra
,
Sandy Lee
,
Lora Lewis
,
Mala Munidasa
,
Fiona Ongeri
,
Shohba Patel
,
Lora Perales
,
Agapito Perez
,
LingLing Pu
,
Stephanie M. Rollmann
,
Robert Ruth
,
Nehad Saada
,
Crystal Warner
,
Aneisa Williams
,
Yuan-Qing Wu
,
Akihiko Yamamoto
,
Yiqing Zhang
,
Yiming Zhu
,
Robert R.H. Anholt
,
Jan O. Korbel
,
David Mittelman
,
Donna M. Muzny
,
Richard A. Gibbs
,
Antonio Barbadilla
,
J. Spencer Johnston
,
Eric A. Stone
,
Stephen Richards
,
Bart Deplancke
,
and
Trudy F.C. Mackay
Genome Res.
July 2014
24
:
1193
-
1208
;
Published in Advance
April 8, 2014
,
doi:
10.1101/gr.171546.113
Abstract
Full Text
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Resource
:
The completion of the Mammalian Gene Collection (MGC)
The MGC Project Team
,
Gary Temple
,
Daniela S. Gerhard
,
Rebekah Rasooly
,
Elise A. Feingold
,
Peter J. Good
,
Cristen Robinson
,
Allison Mandich
,
Jeffrey G. Derge
,
Jeanne Lewis
,
Debonny Shoaf
,
Francis S. Collins
,
Wonhee Jang
,
Lukas Wagner
,
Carolyn M. Shenmen
,
Leonie Misquitta
,
Carl F. Schaefer
,
Kenneth H. Buetow
,
Tom I. Bonner
,
Linda Yankie
,
Ming Ward
,
Lon Phan
,
Alex Astashyn
,
Garth Brown
,
Catherine Farrell
,
Jennifer Hart
,
Melissa Landrum
,
Bonnie L. Maidak
,
Michael Murphy
,
Terence Murphy
,
Bhanu Rajput
,
Lillian Riddick
,
David Webb
,
Janet Weber
,
Wendy Wu
,
Kim D. Pruitt
,
Donna Maglott
,
Adam Siepel
,
Brona Brejova
,
Mark Diekhans
,
Rachel Harte
,
Robert Baertsch
,
Jim Kent
,
David Haussler
,
Michael Brent
,
Laura Langton
,
Charles L.G. Comstock
,
Michael Stevens
,
Chaochun Wei
,
Marijke J. van Baren
,
Kourosh Salehi-Ashtiani
,
Ryan R. Murray
,
Lila Ghamsari
,
Elizabeth Mello
,
Chenwei Lin
,
Christa Pennacchio
,
Kirsten Schreiber
,
Nicole Shapiro
,
Amber Marsh
,
Elizabeth Pardes
,
Troy Moore
,
Anita Lebeau
,
Mike Muratet
,
Blake Simmons
,
David Kloske
,
Stephanie Sieja
,
James Hudson
,
Praveen Sethupathy
,
Michael Brownstein
,
Narayan Bhat
,
Joseph Lazar
,
Howard Jacob
,
Chris E. Gruber
,
Mark R. Smith
,
John McPherson
,
Angela M. Garcia
,
Preethi H. Gunaratne
,
Jiaqian Wu
,
Donna Muzny
,
Richard A. Gibbs
,
Alice C. Young
,
Gerard G. Bouffard
,
Robert W. Blakesley
,
Jim Mullikin
,
Eric D. Green
,
Mark C. Dickson
,
Alex C. Rodriguez
,
Jane Grimwood
,
Jeremy Schmutz
,
Richard M. Myers
,
Martin Hirst
,
Thomas Zeng
,
Kane Tse
,
Michelle Moksa
,
Merinda Deng
,
Kevin Ma
,
Diana Mah
,
Johnson Pang
,
Greg Taylor
,
Eric Chuah
,
Athena Deng
,
Keith Fichter
,
Anne Go
,
Stephanie Lee
,
Jing Wang
,
Malachi Griffith
,
Ryan Morin
,
Richard A. Moore
,
Michael Mayo
,
Sarah Munro
,
Susan Wagner
,
Steven J.M. Jones
,
Robert A. Holt
,
Marco A. Marra
,
Sun Lu
,
Shuwei Yang
,
James Hartigan
,
Marcus Graf
,
Ralf Wagner
,
Stanley Letovksy
,
Jacqueline C. Pulido
,
Keith Robison
,
Dominic Esposito
,
James Hartley
,
Vanessa E. Wall
,
Ralph F. Hopkins
,
Osamu Ohara
,
and
Stefan Wiemann
Genome Res.
December 2009
19
:
2324
-
2333
;
Published in Advance
September 18, 2009
,
doi:
10.1101/gr.095976.109
Abstract
Full Text
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LETTER
:
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
Oliver A. Hampton
,
Petra Den Hollander
,
Christopher A. Miller
,
David A. Delgado
,
Jian Li
,
Cristian Coarfa
,
Ronald A. Harris
,
Stephen Richards
,
Steven E. Scherer
,
Donna M. Muzny
,
Richard A. Gibbs
,
Adrian V. Lee
,
and
Aleksandar Milosavljevic
Genome Res.
February 2009
19
:
167
-
177
;
Published in Advance
December 3, 2008
,
doi:
10.1101/gr.080259.108
Abstract
Full Text
Full Text (PDF)
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LETTER
:
Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5′-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
Jeffrey G. Reid
,
Ankur K. Nagaraja
,
Francis C. Lynn
,
Rafal B. Drabek
,
Donna M. Muzny
,
Chad A. Shaw
,
Michelle K. Weiss
,
Arash O. Naghavi
,
Mahjabeen Khan
,
Huifeng Zhu
,
Jayantha Tennakoon
,
Gemunu H. Gunaratne
,
David B. Corry
,
Jonathan Miller
,
Michael T. McManus
,
Michael S. German
,
Richard A. Gibbs
,
Martin M. Matzuk
,
and
Preethi H. Gunaratne
Genome Res.
October 2008
18
:
1571
-
1581
;
Published in Advance
July 9, 2008
,
doi:
10.1101/gr.078246.108
Abstract
Full Text
Full Text (PDF)
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