Searching journal content for Dent A. Earl in author.

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  1. Method: Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
    • Ian T. Fiddes,
    • Joel Armstrong,
    • Mark Diekhans,
    • Stefanie Nachtweide,
    • Zev N. Kronenberg,
    • Jason G. Underwood,
    • David Gordon,
    • Dent Earl,
    • Thomas Keane,
    • Evan E. Eichler,
    • David Haussler,
    • Mario Stanke,
    • and Benedict Paten
    Genome Res. July 2018 28: 1029-1038; Published in Advance June 8, 2018, doi:10.1101/gr.233460.117
  2. Resource: Alignathon: a competitive assessment of whole-genome alignment methods
    • Dent Earl,
    • Ngan Nguyen,
    • Glenn Hickey,
    • Robert S. Harris,
    • Stephen Fitzgerald,
    • Kathryn Beal,
    • Igor Seledtsov,
    • Vladimir Molodtsov,
    • Brian J. Raney,
    • Hiram Clawson,
    • Jaebum Kim,
    • Carsten Kemena,
    • Jia-Ming Chang,
    • Ionas Erb,
    • Alexander Poliakov,
    • Minmei Hou,
    • Javier Herrero,
    • William James Kent,
    • Victor Solovyev,
    • Aaron E. Darling,
    • Jian Ma,
    • Cedric Notredame,
    • Michael Brudno,
    • Inna Dubchak,
    • David Haussler,
    • and Benedict Paten
    Genome Res. December 2014 24: 2077-2089; Published in Advance October 1, 2014, doi:10.1101/gr.174920.114
    OPEN ACCESS ARTICLE
  3. Resource: Assemblathon 1: A competitive assessment of de novo short read assembly methods
    • Dent Earl,
    • Keith Bradnam,
    • John St. John,
    • Aaron Darling,
    • Dawei Lin,
    • Joseph Fass,
    • Hung On Ken Yu,
    • Vince Buffalo,
    • Daniel R. Zerbino,
    • Mark Diekhans,
    • Ngan Nguyen,
    • Pramila Nuwantha Ariyaratne,
    • Wing-Kin Sung,
    • Zemin Ning,
    • Matthias Haimel,
    • Jared T. Simpson,
    • Nuno A. Fonseca,
    • İnanç Birol,
    • T. Roderick Docking,
    • Isaac Y. Ho,
    • Daniel S. Rokhsar,
    • Rayan Chikhi,
    • Dominique Lavenier,
    • Guillaume Chapuis,
    • Delphine Naquin,
    • Nicolas Maillet,
    • Michael C. Schatz,
    • David R. Kelley,
    • Adam M. Phillippy,
    • Sergey Koren,
    • Shiaw-Pyng Yang,
    • Wei Wu,
    • Wen-Chi Chou,
    • Anuj Srivastava,
    • Timothy I. Shaw,
    • J. Graham Ruby,
    • Peter Skewes-Cox,
    • Miguel Betegon,
    • Michelle T. Dimon,
    • Victor Solovyev,
    • Igor Seledtsov,
    • Petr Kosarev,
    • Denis Vorobyev,
    • Ricardo Ramirez-Gonzalez,
    • Richard Leggett,
    • Dan MacLean,
    • Fangfang Xia,
    • Ruibang Luo,
    • Zhenyu Li,
    • Yinlong Xie,
    • Binghang Liu,
    • Sante Gnerre,
    • Iain MacCallum,
    • Dariusz Przybylski,
    • Filipe J. Ribeiro,
    • Shuangye Yin,
    • Ted Sharpe,
    • Giles Hall,
    • Paul J. Kersey,
    • Richard Durbin,
    • Shaun D. Jackman,
    • Jarrod A. Chapman,
    • Xiaoqiu Huang,
    • Joseph L. DeRisi,
    • Mario Caccamo,
    • Yingrui Li,
    • David B. Jaffe,
    • Richard E. Green,
    • David Haussler,
    • Ian Korf,
    • and Benedict Paten
    Genome Res. December 2011 21: 2224-2241; Published in Advance September 16, 2011, doi:10.1101/gr.126599.111
    OPEN ACCESS ARTICLE
  4. Resource: Cactus: Algorithms for genome multiple sequence alignment
    • Benedict Paten,
    • Dent Earl,
    • Ngan Nguyen,
    • Mark Diekhans,
    • Daniel Zerbino,
    • and David Haussler
    Genome Res. September 2011 21: 1512-1528; Published in Advance June 10, 2011, doi:10.1101/gr.123356.111
    OPEN ACCESS ARTICLE
  5. Research: A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids
    • Bridgett M. vonHoldt,
    • John P. Pollinger,
    • Dent A. Earl,
    • James C. Knowles,
    • Adam R. Boyko,
    • Heidi Parker,
    • Eli Geffen,
    • Malgorzata Pilot,
    • Wlodzimierz Jedrzejewski,
    • Bogumila Jedrzejewska,
    • Vadim Sidorovich,
    • Claudia Greco,
    • Ettore Randi,
    • Marco Musiani,
    • Roland Kays,
    • Carlos D. Bustamante,
    • Elaine A. Ostrander,
    • John Novembre,
    • and Robert K. Wayne
    Genome Res. August 2011 21: 1294-1305; Published in Advance May 12, 2011, doi:10.1101/gr.116301.110
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