Searching journal content for Deanna M. Church in author.

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  1. Method: Resolving the full spectrum of human genome variation using Linked-Reads
    • Patrick Marks,
    • Sarah Garcia,
    • Alvaro Martinez Barrio,
    • Kamila Belhocine,
    • Jorge Bernate,
    • Rajiv Bharadwaj,
    • Keith Bjornson,
    • Claudia Catalanotti,
    • Josh Delaney,
    • Adrian Fehr,
    • Ian T. Fiddes,
    • Brendan Galvin,
    • Haynes Heaton,
    • Jill Herschleb,
    • Christopher Hindson,
    • Esty Holt,
    • Cassandra B. Jabara,
    • Susanna Jett,
    • Nikka Keivanfar,
    • Sofia Kyriazopoulou-Panagiotopoulou,
    • Monkol Lek,
    • Bill Lin,
    • Adam Lowe,
    • Shazia Mahamdallie,
    • Shamoni Maheshwari,
    • Tony Makarewicz,
    • Jamie Marshall,
    • Francesca Meschi,
    • Christopher J. O'Keefe,
    • Heather Ordonez,
    • Pranav Patel,
    • Andrew Price,
    • Ariel Royall,
    • Elise Ruark,
    • Sheila Seal,
    • Michael Schnall-Levin,
    • Preyas Shah,
    • David Stafford,
    • Stephen Williams,
    • Indira Wu,
    • Andrew Wei Xu,
    • Nazneen Rahman,
    • Daniel MacArthur,
    • and Deanna M. Church
    Genome Res. April 2019 29: 635-645; Published in Advance March 20, 2019, doi:10.1101/gr.234443.118
    OPEN ACCESS ARTICLE
  2. Corrigendum: Corrigendum: Direct determination of diploid genome sequences
    • Neil I. Weisenfeld,
    • Vijay Kumar,
    • Preyas Shah,
    • Deanna M. Church,
    • and David B. Jaffe
    Genome Res. April 2018 28: 606.1; doi:10.1101/gr.235812.118
    OPEN ACCESS ARTICLE
  3. Method: Direct determination of diploid genome sequences
    • Neil I. Weisenfeld,
    • Vijay Kumar,
    • Preyas Shah,
    • Deanna M. Church,
    • and David B. Jaffe
    Genome Res. May 2017 27: 757-767; Published in Advance April 5, 2017, doi:10.1101/gr.214874.116
    OPEN ACCESS ARTICLE
  4. Resource: Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
    • Valerie A. Schneider,
    • Tina Graves-Lindsay,
    • Kerstin Howe,
    • Nathan Bouk,
    • Hsiu-Chuan Chen,
    • Paul A. Kitts,
    • Terence D. Murphy,
    • Kim D. Pruitt,
    • Françoise Thibaud-Nissen,
    • Derek Albracht,
    • Robert S. Fulton,
    • Milinn Kremitzki,
    • Vincent Magrini,
    • Chris Markovic,
    • Sean McGrath,
    • Karyn Meltz Steinberg,
    • Kate Auger,
    • William Chow,
    • Joanna Collins,
    • Glenn Harden,
    • Timothy Hubbard,
    • Sarah Pelan,
    • Jared T. Simpson,
    • Glen Threadgold,
    • James Torrance,
    • Jonathan M. Wood,
    • Laura Clarke,
    • Sergey Koren,
    • Matthew Boitano,
    • Paul Peluso,
    • Heng Li,
    • Chen-Shan Chin,
    • Adam M. Phillippy,
    • Richard Durbin,
    • Richard K. Wilson,
    • Paul Flicek,
    • Evan E. Eichler,
    • and Deanna M. Church
    Genome Res. May 2017 27: 849-864; Published in Advance April 10, 2017, doi:10.1101/gr.213611.116
    OPEN ACCESS ARTICLE
  5. Resource: Single haplotype assembly of the human genome from a hydatidiform mole
    • Karyn Meltz Steinberg,
    • Valerie A. Schneider,
    • Tina A. Graves-Lindsay,
    • Robert S. Fulton,
    • Richa Agarwala,
    • John Huddleston,
    • Sergey A. Shiryev,
    • Aleksandr Morgulis,
    • Urvashi Surti,
    • Wesley C. Warren,
    • Deanna M. Church,
    • Evan E. Eichler,
    • and Richard K. Wilson
    Genome Res. December 2014 24: 2066-2076; Published in Advance November 4, 2014, doi:10.1101/gr.180893.114
  6. ARTICLE: Analysis of Segmental Duplications and Genome Assembly in the Mouse
    • Jeffrey A. Bailey,
    • Deanna M. Church,
    • Mario Ventura,
    • Mariano Rocchi,
    • and Evan E. Eichler
    Genome Res. May 2004 14: 789-801; doi:10.1101/gr.2238404
  7. RESOURCE: Connecting Sequence and Biology in the Laboratory Mouse
    • Richard M. Baldarelli,
    • David P. Hill,
    • Judith A. Blake,
    • Jun Adachi,
    • Masaaki Furuno,
    • Dirck Bradt,
    • Lori E. Corbani,
    • Sharon Cousins,
    • Kenneth S. Frazer,
    • Dong Qi,
    • Longlong Yang,
    • Sridhar Ramachandran,
    • Deborah Reed,
    • Yunxia Zhu,
    • Takeya Kasukawa,
    • Martin Ringwald,
    • Benjamin L. King,
    • Lois J. Maltais,
    • Louise M. McKenzie,
    • Lynn M. Schriml,
    • Donna Maglott,
    • Deanna M. Church,
    • Kim Pruitt,
    • Janan T. Eppig,
    • Joel E. Richardson,
    • Jim A. Kadin,
    • and Carol J. Bult
    Genome Res. June 2003 13: 1505-1519; doi:10.1101/gr.991003
  8. REVIEW: Cross-Species Sequence Comparisons: A Review of Methods and Available Resources
    • Kelly A. Frazer,
    • Laura Elnitski,
    • Deanna M. Church,
    • Inna Dubchak,
    • and Ross C. Hardison
    Genome Res. January 1, 2003 13: 1-12; doi:10.1101/gr.222003
  9. RESOURCE: Spidey: A Tool for mRNA-to-Genomic Alignments
    • Sarah J. Wheelan,
    • Deanna M. Church,
    • and James M. Ostell
    Genome Res. November 1, 2001 11: 1952-1957; Published in Advance October 15, 2001, doi:10.1101/gr.195301
  10. RESEARCH: A Radiation Hybrid Map of Human Chromosome 5 with Integration of Cytogenetic, Genetic, and Transcript Maps
    • John D. McPherson,
    • Barbara Apostol,
    • Caryn B. Wagner-McPherson,
    • Simin Hakim,
    • Richard G. Del Mastro,
    • Naeema Aziz,
    • Elizabeth Baer,
    • Genalyn Gonzales,
    • Mary Carol Krane,
    • Rachelle Markovich,
    • Peter Masny,
    • Miguel Ortega,
    • John Vu,
    • Marco Vujicic,
    • Deanna M. Church,
    • Allan Segal,
    • Deborah L. Grady,
    • Robert K. Moyzis,
    • M. Anne Spence,
    • Michael Lovett,
    • and John J. Wasmuth
    Genome Res. September 1, 1997 7: 897-909; doi:10.1101/gr.7.9.897
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