Searching journal content for David MacAlpine in author.

Displaying results 1-10 of 12
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  1. Research: Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation
    • Kevin Moyung,
    • Yulong Li,
    • Heather K. MacAlpine,
    • Alexander J. Hartemink,
    • and David M. MacAlpine
    Genome Res. January 2026 36: 115-128; Published in Advance December 9, 2025, doi:10.1101/gr.279637.124
  2. Research: Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase
    • Boning Chen,
    • Heather K. MacAlpine,
    • Alexander J. Hartemink,
    • and David M. MacAlpine
    Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123
  3. Research: Linking the dynamics of chromatin occupancy and transcription with predictive models
    • Trung Q. Tran,
    • Heather K. MacAlpine,
    • Vinay Tripuraneni,
    • Sneha Mitra,
    • David M. MacAlpine,
    • and Alexander J. Hartemink
    Genome Res. June 2021 31: 1035-1046; Published in Advance April 23, 2021, doi:10.1101/gr.267237.120
  4. Research: Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication
    • Vinay Tripuraneni,
    • Gonen Memisoglu,
    • Heather K. MacAlpine,
    • Trung Q. Tran,
    • Wei Zhu,
    • Alexander J. Hartemink,
    • James E. Haber,
    • and David M. MacAlpine
    Genome Res. May 2021 31: 775-788; Published in Advance April 2, 2021, doi:10.1101/gr.271155.120
  5. Research: Nascent chromatin occupancy profiling reveals locus- and factor-specific chromatin maturation dynamics behind the DNA replication fork
    • Mónica P. Gutiérrez,
    • Heather K. MacAlpine,
    • and David M. MacAlpine
    Genome Res. July 2019 29: 1123-1133; Published in Advance June 19, 2019, doi:10.1101/gr.243386.118
  6. Research: Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila
    • Robin L. Armstrong,
    • Taylor J.R. Penke,
    • Brian D. Strahl,
    • A. Gregory Matera,
    • Daniel J. McKay,
    • David M. MacAlpine,
    • and Robert J. Duronio
    Genome Res. November 2018 28: 1688-1700; Published in Advance October 2, 2018, doi:10.1101/gr.239913.118
  7. Research: Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
    • Scott A. Lujan,
    • Anders R. Clausen,
    • Alan B. Clark,
    • Heather K. MacAlpine,
    • David M. MacAlpine,
    • Ewa P. Malc,
    • Piotr A. Mieczkowski,
    • Adam B. Burkholder,
    • David C. Fargo,
    • Dmitry A. Gordenin,
    • and Thomas A. Kunkel
    Genome Res. November 2014 24: 1751-1764; Published in Advance September 12, 2014, doi:10.1101/gr.178335.114
  8. Research: DNA replication and transcription programs respond to the same chromatin cues
    • Yoav Lubelsky,
    • Joseph A. Prinz,
    • Leyna DeNapoli,
    • Yulong Li,
    • Jason A. Belsky,
    • and David M. MacAlpine
    Genome Res. July 2014 24: 1102-1114; Published in Advance July 1, 2014, doi:10.1101/gr.160010.113
    OPEN ACCESS ARTICLE
  9. Research: Developmental control of gene copy number by repression of replication initiation and fork progression
    • Noa Sher,
    • George W. Bell,
    • Sharon Li,
    • Jared Nordman,
    • Thomas Eng,
    • Matthew L. Eaton,
    • David M. MacAlpine,
    • and Terry L. Orr-Weaver
    Genome Res. January 2012 22: 64-75; Published in Advance November 16, 2011, doi:10.1101/gr.126003.111
    OPEN ACCESS ARTICLE
  10. Research: Chromatin signatures of the Drosophila replication program
    • Matthew L. Eaton,
    • Joseph A. Prinz,
    • Heather K. MacAlpine,
    • George Tretyakov,
    • Peter V. Kharchenko,
    • and David M. MacAlpine
    Genome Res. February 2011 21: 164-174; Published in Advance December 22, 2010, doi:10.1101/gr.116038.110
    OPEN ACCESS ARTICLE
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