Searching journal content for David M. Gilbert in author.

Displaying results 1-8 of 8
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  1. Research: Replication timing networks reveal a link between transcription regulatory circuits and replication timing control
    • Juan Carlos Rivera-Mulia,
    • Sebo Kim,
    • Haitham Gabr,
    • Abhijit Chakraborty,
    • Ferhat Ay,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. September 2019 29: 1415-1428; Published in Advance August 21, 2019, doi:10.1101/gr.247049.118
  2. Research: Allele-specific control of replication timing and genome organization during development
    • Juan Carlos Rivera-Mulia,
    • Andrew Dimond,
    • Daniel Vera,
    • Claudia Trevilla-Garcia,
    • Takayo Sasaki,
    • Jared Zimmerman,
    • Catherine Dupont,
    • Joost Gribnau,
    • Peter Fraser,
    • and David M. Gilbert
    Genome Res. June 2018 28: 800-811; Published in Advance May 7, 2018, doi:10.1101/gr.232561.117
  3. Research: Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
    • Vishnu Dileep,
    • Ferhat Ay,
    • Jiao Sima,
    • Daniel L. Vera,
    • William S. Noble,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1104-1113; Published in Advance May 20, 2015, doi:10.1101/gr.183699.114
  4. Research: Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
    • Juan Carlos Rivera-Mulia,
    • Quinton Buckley,
    • Takayo Sasaki,
    • Jared Zimmerman,
    • Ruth A. Didier,
    • Kristopher Nazor,
    • Jeanne F. Loring,
    • Zheng Lian,
    • Sherman Weissman,
    • Allan J. Robins,
    • Thomas C. Schulz,
    • Laura Menendez,
    • Michael J. Kulik,
    • Stephen Dalton,
    • Haitham Gabr,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1091-1103; Published in Advance June 8, 2015, doi:10.1101/gr.187989.114
  5. Method: Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
    • Maxwell W. Libbrecht,
    • Ferhat Ay,
    • Michael M. Hoffman,
    • David M. Gilbert,
    • Jeffrey A. Bilmes,
    • and William Stafford Noble
    Genome Res. April 2015 25: 544-557; Published in Advance February 12, 2015, doi:10.1101/gr.184341.114
  6. Research: Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia
    • Tyrone Ryba,
    • Dana Battaglia,
    • Bill H. Chang,
    • James W. Shirley,
    • Quinton Buckley,
    • Benjamin D. Pope,
    • Meenakshi Devidas,
    • Brian J. Druker,
    • and David M. Gilbert
    Genome Res. October 2012 22: 1833-1844; Published in Advance May 24, 2012, doi:10.1101/gr.138511.112
  7. Research: Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
    • Tyrone Ryba,
    • Ichiro Hiratani,
    • Junjie Lu,
    • Mari Itoh,
    • Michael Kulik,
    • Jinfeng Zhang,
    • Thomas C. Schulz,
    • Allan J. Robins,
    • Stephen Dalton,
    • and David M. Gilbert
    Genome Res. June 2010 20: 761-770; Published in Advance April 29, 2010, doi:10.1101/gr.099655.109
  8. Article: Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
    • Ichiro Hiratani,
    • Tyrone Ryba,
    • Mari Itoh,
    • Joy Rathjen,
    • Michael Kulik,
    • Bernadett Papp,
    • Eden Fussner,
    • David P. Bazett-Jones,
    • Kathrin Plath,
    • Stephen Dalton,
    • Peter D. Rathjen,
    • and David M. Gilbert
    Genome Res. February 2010 20: 155-169; Published in Advance December 1, 2009, doi:10.1101/gr.099796.109
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