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David G. Knowles
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Displaying results 1-6 of
6
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Method
:
A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data
Cameron Park
,
Shouvik Mani
,
Nicolas Beltran-Velez
,
Katie Maurer
,
Teddy Huang
,
Shuqiang Li
,
Satyen Gohil
,
Kenneth J. Livak
,
David A. Knowles
,
Catherine J. Wu
,
and
Elham Azizi
Genome Res.
September 2024
34
:
1384
-
1396
;
Published in Advance
September 5, 2024
,
doi:
10.1101/gr.279126.124
Abstract
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Research
:
Impact of the X Chromosome and sex on regulatory variation
Kimberly R. Kukurba
,
Princy Parsana
,
Brunilda Balliu
,
Kevin S. Smith
,
Zachary Zappala
,
David A. Knowles
,
Marie-Julie Favé
,
Joe R. Davis
,
Xin Li
,
Xiaowei Zhu
,
James B. Potash
,
Myrna M. Weissman
,
Jianxin Shi
,
Anshul Kundaje
,
Douglas F. Levinson
,
Philip Awadalla
,
Sara Mostafavi
,
Alexis Battle
,
and
Stephen B. Montgomery
Genome Res.
June 2016
26
:
768
-
777
;
Published in Advance
April 21, 2016
,
doi:
10.1101/gr.197897.115
Abstract
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Research
:
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
Pedro G. Ferreira
,
Pedro Jares
,
Daniel Rico
,
Gonzalo Gómez-López
,
Alejandra Martínez-Trillos
,
Neus Villamor
,
Simone Ecker
,
Abel González-Pérez
,
David G. Knowles
,
Jean Monlong
,
Rory Johnson
,
Victor Quesada
,
Sarah Djebali
,
Panagiotis Papasaikas
,
Mónica López-Guerra
,
Dolors Colomer
,
Cristina Royo
,
Maite Cazorla
,
Magda Pinyol
,
Guillem Clot
,
Marta Aymerich
,
Maria Rozman
,
Marta Kulis
,
David Tamborero
,
Anaïs Gouin
,
Julie Blanc
,
Marta Gut
,
Ivo Gut
,
Xose S. Puente
,
David G. Pisano
,
José Ignacio Martin-Subero
,
Nuria López-Bigas
,
Armando López-Guillermo
,
Alfonso Valencia
,
Carlos López-Otín
,
Elías Campo
,
and
Roderic Guigó
Genome Res.
February 2014
24
:
212
-
226
;
Published in Advance
November 21, 2013
,
doi:
10.1101/gr.152132.112
Abstract
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Research
:
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
Hagen Tilgner
,
David G. Knowles
,
Rory Johnson
,
Carrie A. Davis
,
Sudipto Chakrabortty
,
Sarah Djebali
,
João Curado
,
Michael Snyder
,
Thomas R. Gingeras
,
and
Roderic Guigó
Genome Res.
September 2012
22
:
1616
-
1625
;
doi:
10.1101/gr.134445.111
Abstract
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Resource
:
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien
,
Rory Johnson
,
Giovanni Bussotti
,
Andrea Tanzer
,
Sarah Djebali
,
Hagen Tilgner
,
Gregory Guernec
,
David Martin
,
Angelika Merkel
,
David G. Knowles
,
Julien Lagarde
,
Lavanya Veeravalli
,
Xiaoan Ruan
,
Yijun Ruan
,
Timo Lassmann
,
Piero Carninci
,
James B. Brown
,
Leonard Lipovich
,
Jose M. Gonzalez
,
Mark Thomas
,
Carrie A. Davis
,
Ramin Shiekhattar
,
Thomas R. Gingeras
,
Tim J. Hubbard
,
Cedric Notredame
,
Jennifer Harrow
,
and
Roderic Guigó
Genome Res.
September 2012
22
:
1775
-
1789
;
doi:
10.1101/gr.132159.111
Abstract
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Letter
:
Recent de novo origin of human protein-coding genes
David G. Knowles
and
Aoife McLysaght
Genome Res.
October 2009
19
:
1752
-
1759
;
Published in Advance
September 2, 2009
,
doi:
10.1101/gr.095026.109
Abstract
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