Searching journal content for David C. King in author.

Displaying results 1-8 of 8
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  1. Article: Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Yong Cheng,
    • Weisheng Wu,
    • Swathi Ashok Kumar,
    • Duonan Yu,
    • Wulan Deng,
    • Tamara Tripic,
    • David C. King,
    • Kuan-Bei Chen,
    • Ying Zhang,
    • Daniela Drautz,
    • Belinda Giardine,
    • Stephan C. Schuster,
    • Webb Miller,
    • Francesca Chiaromonte,
    • Yu Zhang,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2009 19: 2172-2184; Published in Advance November 3, 2009, doi:10.1101/gr.098921.109
    OPEN ACCESS ARTICLE
  2. LETTER: Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
    • Yong Cheng,
    • David C. King,
    • Louis C. Dore,
    • Xinmin Zhang,
    • Yuepin Zhou,
    • Ying Zhang,
    • Christine Dorman,
    • Demesew Abebe,
    • Swathi A. Kumar,
    • Francesca Chiaromonte,
    • Webb Miller,
    • Roland D. Green,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2008 18: 1896-1905; Published in Advance September 25, 2008, doi:10.1101/gr.083089.108
    OPEN ACCESS ARTICLE
  3. RESOURCE: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107
  4. LETTER: Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data
    • David C. King,
    • James Taylor,
    • Ying Zhang,
    • Yong Cheng,
    • Heather A. Lawson,
    • Joel Martin,
    • ENCODE groups for Transcriptional Regulation and Multispecies Sequence Analysis,
    • Francesca Chiaromonte,
    • Webb Miller,
    • and Ross C. Hardison
    Genome Res. June 2007 17: 775-786; doi:10.1101/gr.5592107
    OPEN ACCESS ARTICLE
  5. LETTER: Experimental validation of predicted mammalian erythroid cis-regulatory modules
    • Hao Wang,
    • Ying Zhang,
    • Yong Cheng,
    • Yuepin Zhou,
    • David C. King,
    • James Taylor,
    • Francesca Chiaromonte,
    • Jyotsna Kasturi,
    • Hanna Petrykowska,
    • Brian Gibb,
    • Christine Dorman,
    • Webb Miller,
    • Louis C. Dore,
    • John Welch,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2006 16: 1480-1492; Published in Advance October 12, 2006, doi:10.1101/gr.5353806
    OPEN ACCESS ARTICLE
  6. Methods: ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
    • James Taylor,
    • Svitlana Tyekucheva,
    • David C. King,
    • Ross C. Hardison,
    • Webb Miller,
    • and Francesca Chiaromonte
    Genome Res. December 2006 16: 1596-1604; Published in Advance October 19, 2006, doi:10.1101/gr.4537706
    OPEN ACCESS ARTICLE
  7. LETTER: Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
    • David C. King,
    • James Taylor,
    • Laura Elnitski,
    • Francesca Chiaromonte,
    • Webb Miller,
    • and Ross C. Hardison
    Genome Res. August 2005 15: 1051-1060; Published in Advance July 15, 2005, doi:10.1101/gr.3642605
  8. ARTICLE: Genome-Wide Epistatic Interaction Analysis Reveals Complex Genetic Determinants of Circadian Behavior in Mice
    • Kazuhiro Shimomura,
    • Sharon S. Low-Zeddies,
    • David P. King,
    • Thomas D.L. Steeves,
    • Andrew Whiteley,
    • Jani Kushla,
    • Peter D. Zemenides,
    • Andrew Lin,
    • Martha Hotz Vitaterna,
    • Gary A. Churchill,
    • and Joseph S. Takahashi
    Genome Res. June 1, 2001 11: 959-980; doi:10.1101/gr.171601
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