Searching journal content for David A. Wheeler in author.

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  1. Research: Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
    • Eve Shinbrot,
    • Erin E. Henninger,
    • Nils Weinhold,
    • Kyle R. Covington,
    • A. Yasemin Göksenin,
    • Nikolaus Schultz,
    • Hsu Chao,
    • HarshaVardhan Doddapaneni,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Chris Sander,
    • Zachary F. Pursell,
    • and David A. Wheeler
    Genome Res. November 2014 24: 1740-1750; Published in Advance September 16, 2014, doi:10.1101/gr.174789.114
  2. Perspective: From human genome to cancer genome: The first decade
    • David A. Wheeler and
    • Linghua Wang
    Genome Res. July 2013 23: 1054-1062; doi:10.1101/gr.157602.113
  3. Resource: A SNP discovery method to assess variant allele probability from next-generation resequencing data
    • Yufeng Shen,
    • Zhengzheng Wan,
    • Cristian Coarfa,
    • Rafal Drabek,
    • Lei Chen,
    • Elizabeth A. Ostrowski,
    • Yue Liu,
    • George M. Weinstock,
    • David A. Wheeler,
    • Richard A. Gibbs,
    • and Fuli Yu
    Genome Res. February 2010 20: 273-280; Published in Advance December 17, 2009, doi:10.1101/gr.096388.109
    OPEN ACCESS ARTICLE
  4. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  5. LETTER: Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae
    • James P. Kastenmayer,
    • Li Ni,
    • Angela Chu,
    • Lauren E. Kitchen,
    • Wei-Chun Au,
    • Hui Yang,
    • Carole D. Carter,
    • David Wheeler,
    • Ronald W. Davis,
    • Jef D. Boeke,
    • Michael A. Snyder,
    • and Munira A. Basrai
    Genome Res. March 2006 16: 365-373; doi:10.1101/gr.4355406
  6. ARTICLE: Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
    • Stephen Richards,
    • Yue Liu,
    • Brian R. Bettencourt,
    • Pavel Hradecky,
    • Stan Letovsky,
    • Rasmus Nielsen,
    • Kevin Thornton,
    • Melissa J. Hubisz,
    • Rui Chen,
    • Richard P. Meisel,
    • Olivier Couronne,
    • Sujun Hua,
    • Mark A. Smith,
    • Peili Zhang,
    • Jing Liu,
    • Harmen J. Bussemaker,
    • Marinus F. van Batenburg,
    • Sally L. Howells,
    • Steven E. Scherer,
    • Erica Sodergren,
    • Beverly B. Matthews,
    • Madeline A. Crosby,
    • Andrew J. Schroeder,
    • Daniel Ortiz-Barrientos,
    • Catharine M. Rives,
    • Michael L. Metzker,
    • Donna M. Muzny,
    • Graham Scott,
    • David Steffen,
    • David A. Wheeler,
    • Kim C. Worley,
    • Paul Havlak,
    • K. James Durbin,
    • Amy Egan,
    • Rachel Gill,
    • Jennifer Hume,
    • Margaret B. Morgan,
    • George Miner,
    • Cerissa Hamilton,
    • Yanmei Huang,
    • Lenée Waldron,
    • Daniel Verduzco,
    • Kerstin P. Clerc-Blankenburg,
    • Inna Dubchak,
    • Mohamed A.F. Noor,
    • Wyatt Anderson,
    • Kevin P. White,
    • Andrew G. Clark,
    • Stephen W. Schaeffer,
    • William Gelbart,
    • George M. Weinstock,
    • and Richard A. Gibbs
    Genome Res. January 2005 15: 1-18; doi:10.1101/gr.3059305
    OPEN ACCESS ARTICLE
  7. LETTER: Genomic Analysis of the Nuclear Receptor Family: New Insights Into Structure, Regulation, and Evolution From the Rat Genome
    • Zhengdong Zhang,
    • Paula E. Burch,
    • Austin J. Cooney,
    • Rainer B. Lanz,
    • Fred A. Pereira,
    • Jiaqian Wu,
    • Richard A. Gibbs,
    • George Weinstock,
    • and David A. Wheeler
    Genome Res. April 2004 14: 580-590; doi:10.1101/gr.2160004
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