Searching journal content for David A. Knowles in author.

Displaying results 1-6 of 6
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  1. Method: A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data
    • Cameron Park,
    • Shouvik Mani,
    • Nicolas Beltran-Velez,
    • Katie Maurer,
    • Teddy Huang,
    • Shuqiang Li,
    • Satyen Gohil,
    • Kenneth J. Livak,
    • David A. Knowles,
    • Catherine J. Wu,
    • and Elham Azizi
    Genome Res. September 2024 34: 1384-1396; Published in Advance September 5, 2024, doi:10.1101/gr.279126.124
    OPEN ACCESS ARTICLE
  2. Research: Impact of the X Chromosome and sex on regulatory variation
    • Kimberly R. Kukurba,
    • Princy Parsana,
    • Brunilda Balliu,
    • Kevin S. Smith,
    • Zachary Zappala,
    • David A. Knowles,
    • Marie-Julie Favé,
    • Joe R. Davis,
    • Xin Li,
    • Xiaowei Zhu,
    • James B. Potash,
    • Myrna M. Weissman,
    • Jianxin Shi,
    • Anshul Kundaje,
    • Douglas F. Levinson,
    • Philip Awadalla,
    • Sara Mostafavi,
    • Alexis Battle,
    • and Stephen B. Montgomery
    Genome Res. June 2016 26: 768-777; Published in Advance April 21, 2016, doi:10.1101/gr.197897.115
    OPEN ACCESS ARTICLE
  3. Research: Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
    • Pedro G. Ferreira,
    • Pedro Jares,
    • Daniel Rico,
    • Gonzalo Gómez-López,
    • Alejandra Martínez-Trillos,
    • Neus Villamor,
    • Simone Ecker,
    • Abel González-Pérez,
    • David G. Knowles,
    • Jean Monlong,
    • Rory Johnson,
    • Victor Quesada,
    • Sarah Djebali,
    • Panagiotis Papasaikas,
    • Mónica López-Guerra,
    • Dolors Colomer,
    • Cristina Royo,
    • Maite Cazorla,
    • Magda Pinyol,
    • Guillem Clot,
    • Marta Aymerich,
    • Maria Rozman,
    • Marta Kulis,
    • David Tamborero,
    • Anaïs Gouin,
    • Julie Blanc,
    • Marta Gut,
    • Ivo Gut,
    • Xose S. Puente,
    • David G. Pisano,
    • José Ignacio Martin-Subero,
    • Nuria López-Bigas,
    • Armando López-Guillermo,
    • Alfonso Valencia,
    • Carlos López-Otín,
    • Elías Campo,
    • and Roderic Guigó
    Genome Res. February 2014 24: 212-226; Published in Advance November 21, 2013, doi:10.1101/gr.152132.112
    OPEN ACCESS ARTICLE
  4. Research: Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
    • Hagen Tilgner,
    • David G. Knowles,
    • Rory Johnson,
    • Carrie A. Davis,
    • Sudipto Chakrabortty,
    • Sarah Djebali,
    • João Curado,
    • Michael Snyder,
    • Thomas R. Gingeras,
    • and Roderic Guigó
    Genome Res. September 2012 22: 1616-1625; doi:10.1101/gr.134445.111
    OPEN ACCESS ARTICLE
  5. Resource: The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Thomas Derrien,
    • Rory Johnson,
    • Giovanni Bussotti,
    • Andrea Tanzer,
    • Sarah Djebali,
    • Hagen Tilgner,
    • Gregory Guernec,
    • David Martin,
    • Angelika Merkel,
    • David G. Knowles,
    • Julien Lagarde,
    • Lavanya Veeravalli,
    • Xiaoan Ruan,
    • Yijun Ruan,
    • Timo Lassmann,
    • Piero Carninci,
    • James B. Brown,
    • Leonard Lipovich,
    • Jose M. Gonzalez,
    • Mark Thomas,
    • Carrie A. Davis,
    • Ramin Shiekhattar,
    • Thomas R. Gingeras,
    • Tim J. Hubbard,
    • Cedric Notredame,
    • Jennifer Harrow,
    • and Roderic Guigó
    Genome Res. September 2012 22: 1775-1789; doi:10.1101/gr.132159.111
    OPEN ACCESS ARTICLE
  6. Letter: Recent de novo origin of human protein-coding genes
    • David G. Knowles and
    • Aoife McLysaght
    Genome Res. October 2009 19: 1752-1759; Published in Advance September 2, 2009, doi:10.1101/gr.095026.109
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