Searching journal content for Daofeng Li in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Resource: Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
    • Jiawei Shen,
    • Siyuan Cheng,
    • Deepak Purushotham,
    • Xiaoyu Zhuo,
    • Alan Y Du,
    • Wenjin Zhang,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. February 21, 2025 gr.279764.124; Published in Advance February 21, 2025, doi:10.1101/gr.279764.124
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  3. Resource: Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
    • Xiaoyu Zhuo,
    • Silas Hsu,
    • Deepak Purushotham,
    • Prashant Kumar Kuntala,
    • Jessica K. Harrison,
    • Alan Y. Du,
    • Samuel Chen,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. May 2023 33: 824-835; Published in Advance May 8, 2023, doi:10.1101/gr.277550.122
    OPEN ACCESS ARTICLE
  4. Method: Epigenomic differences in the human and chimpanzee genomes are associated with structural variation
    • Xiaoyu Zhuo,
    • Alan Y. Du,
    • Erica C. Pehrsson,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. February 2021 31: 279-290; Published in Advance December 10, 2020, doi:10.1101/gr.263491.120
  5. Research: Widespread contribution of transposable elements to the innovation of gene regulatory networks
    • Vasavi Sundaram,
    • Yong Cheng,
    • Zhihai Ma,
    • Daofeng Li,
    • Xiaoyun Xing,
    • Peter Edge,
    • Michael P. Snyder,
    • and Ting Wang
    Genome Res. December 2014 24: 1963-1976; Published in Advance October 15, 2014, doi:10.1101/gr.168872.113
  6. Research: Recurrent epimutations activate gene body promoters in primary glioblastoma
    • Raman P. Nagarajan,
    • Bo Zhang,
    • Robert J.A. Bell,
    • Brett E. Johnson,
    • Adam B. Olshen,
    • Vasavi Sundaram,
    • Daofeng Li,
    • Ashley E. Graham,
    • Aaron Diaz,
    • Shaun D. Fouse,
    • Ivan Smirnov,
    • Jun Song,
    • Pamela L. Paris,
    • Ting Wang,
    • and Joseph F. Costello
    Genome Res. May 2014 24: 761-774; Published in Advance April 7, 2014, doi:10.1101/gr.164707.113
  7. Method: Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
    • Bo Zhang,
    • Yan Zhou,
    • Nan Lin,
    • Rebecca F. Lowdon,
    • Chibo Hong,
    • Raman P. Nagarajan,
    • Jeffrey B. Cheng,
    • Daofeng Li,
    • Michael Stevens,
    • Hyung Joo Lee,
    • Xiaoyun Xing,
    • Jia Zhou,
    • Vasavi Sundaram,
    • GiNell Elliott,
    • Junchen Gu,
    • Taoping Shi,
    • Philippe Gascard,
    • Mahvash Sigaroudinia,
    • Thea D. Tlsty,
    • Theresa Kadlecek,
    • Arthur Weiss,
    • Henriette O’Geen,
    • Peggy J. Farnham,
    • Cécile L. Maire,
    • Keith L. Ligon,
    • Pamela A.F. Madden,
    • Angela Tam,
    • Richard Moore,
    • Martin Hirst,
    • Marco A. Marra,
    • Baoxue Zhang,
    • Joseph F. Costello,
    • and Ting Wang
    Genome Res. September 2013 23: 1522-1540; Published in Advance June 26, 2013, doi:10.1101/gr.156539.113
    OPEN ACCESS ARTICLE
  8. Method: Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
    • Michael Stevens,
    • Jeffrey B. Cheng,
    • Daofeng Li,
    • Mingchao Xie,
    • Chibo Hong,
    • Cécile L. Maire,
    • Keith L. Ligon,
    • Martin Hirst,
    • Marco A. Marra,
    • Joseph F. Costello,
    • and Ting Wang
    Genome Res. September 2013 23: 1541-1553; Published in Advance June 26, 2013, doi:10.1101/gr.152231.112
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