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Daniel Zerbino
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author
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Displaying results 1-6 of
6
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Method
:
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha
,
Yungil Kim
,
Ariel D.H. Gewirtz
,
Brian Jo
,
Chuan Gao
,
Ian C. McDowell
,
The GTEx Consortium
,
Barbara E. Engelhardt
,
and
Alexis Battle
Genome Res.
November 2017
27
:
1843
-
1858
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216721.116
Abstract
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Method
:
Identifying
cis
-mediators for
trans
-eQTLs across many human tissues using genomic mediation analysis
Fan Yang
,
Jiebiao Wang
,
The GTEx Consortium
,
Brandon L. Pierce
,
and
Lin S. Chen
Genome Res.
November 2017
27
:
1859
-
1871
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216754.116
Abstract
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Resource
:
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl
,
Keith Bradnam
,
John St. John
,
Aaron Darling
,
Dawei Lin
,
Joseph Fass
,
Hung On Ken Yu
,
Vince Buffalo
,
Daniel R. Zerbino
,
Mark Diekhans
,
Ngan Nguyen
,
Pramila Nuwantha Ariyaratne
,
Wing-Kin Sung
,
Zemin Ning
,
Matthias Haimel
,
Jared T. Simpson
,
Nuno A. Fonseca
,
İnanç Birol
,
T. Roderick Docking
,
Isaac Y. Ho
,
Daniel S. Rokhsar
,
Rayan Chikhi
,
Dominique Lavenier
,
Guillaume Chapuis
,
Delphine Naquin
,
Nicolas Maillet
,
Michael C. Schatz
,
David R. Kelley
,
Adam M. Phillippy
,
Sergey Koren
,
Shiaw-Pyng Yang
,
Wei Wu
,
Wen-Chi Chou
,
Anuj Srivastava
,
Timothy I. Shaw
,
J. Graham Ruby
,
Peter Skewes-Cox
,
Miguel Betegon
,
Michelle T. Dimon
,
Victor Solovyev
,
Igor Seledtsov
,
Petr Kosarev
,
Denis Vorobyev
,
Ricardo Ramirez-Gonzalez
,
Richard Leggett
,
Dan MacLean
,
Fangfang Xia
,
Ruibang Luo
,
Zhenyu Li
,
Yinlong Xie
,
Binghang Liu
,
Sante Gnerre
,
Iain MacCallum
,
Dariusz Przybylski
,
Filipe J. Ribeiro
,
Shuangye Yin
,
Ted Sharpe
,
Giles Hall
,
Paul J. Kersey
,
Richard Durbin
,
Shaun D. Jackman
,
Jarrod A. Chapman
,
Xiaoqiu Huang
,
Joseph L. DeRisi
,
Mario Caccamo
,
Yingrui Li
,
David B. Jaffe
,
Richard E. Green
,
David Haussler
,
Ian Korf
,
and
Benedict Paten
Genome Res.
December 2011
21
:
2224
-
2241
;
Published in Advance
September 16, 2011
,
doi:
10.1101/gr.126599.111
Abstract
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Resource
:
Cactus: Algorithms for genome multiple sequence alignment
Benedict Paten
,
Dent Earl
,
Ngan Nguyen
,
Mark Diekhans
,
Daniel Zerbino
,
and
David Haussler
Genome Res.
September 2011
21
:
1512
-
1528
;
Published in Advance
June 10, 2011
,
doi:
10.1101/gr.123356.111
Abstract
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Methods
:
A new strategy for genome assembly using short sequence reads and reduced representation libraries
Andrew L. Young
,
Hatice Ozel Abaan
,
Daniel Zerbino
,
James C. Mullikin
,
Ewan Birney
,
and
Elliott H. Margulies
Genome Res.
February 2010
20
:
249
-
256
;
doi:
10.1101/gr.097956.109
Abstract
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RESOURCE
:
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino
and
Ewan Birney
Genome Res.
May 2008
18
:
821
-
829
;
Published in Advance
March 18, 2008
,
doi:
10.1101/gr.074492.107
Abstract
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