Searching journal content for Daniel G. MacArthur in author.

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  1. Resource: Discordant calls across genotype discovery approaches elucidate variants with systematic errors
    • Elizabeth G. Atkinson,
    • Mykyta Artomov,
    • Alexander A. Loboda,
    • Heidi L. Rehm,
    • Daniel G. MacArthur,
    • Konrad J. Karczewski,
    • Benjamin M. Neale,
    • and Mark J. Daly
    Genome Res. May 30, 2023 ; Published in Advance May 30, 2023, doi:10.1101/gr.277908.123
  2. Resource: Mitochondrial DNA variation across 56,434 individuals in gnomAD
    • Kristen M. Laricchia,
    • Nicole J. Lake,
    • Nicholas A. Watts,
    • Megan Shand,
    • Andrea Haessly,
    • Laura Gauthier,
    • David Benjamin,
    • Eric Banks,
    • Jose Soto,
    • Kiran Garimella,
    • James Emery,
    • Genome Aggregation Database Consortium,
    • Heidi L. Rehm,
    • Daniel G. MacArthur,
    • Grace Tiao,
    • Monkol Lek,
    • Vamsi K. Mootha,
    • and Sarah E. Calvo
    Genome Res. March 2022 32: 569-582; Published in Advance January 24, 2022, doi:10.1101/gr.276013.121
    OPEN ACCESS ARTICLE
  3. Method: Resolving the full spectrum of human genome variation using Linked-Reads
    • Patrick Marks,
    • Sarah Garcia,
    • Alvaro Martinez Barrio,
    • Kamila Belhocine,
    • Jorge Bernate,
    • Rajiv Bharadwaj,
    • Keith Bjornson,
    • Claudia Catalanotti,
    • Josh Delaney,
    • Adrian Fehr,
    • Ian T. Fiddes,
    • Brendan Galvin,
    • Haynes Heaton,
    • Jill Herschleb,
    • Christopher Hindson,
    • Esty Holt,
    • Cassandra B. Jabara,
    • Susanna Jett,
    • Nikka Keivanfar,
    • Sofia Kyriazopoulou-Panagiotopoulou,
    • Monkol Lek,
    • Bill Lin,
    • Adam Lowe,
    • Shazia Mahamdallie,
    • Shamoni Maheshwari,
    • Tony Makarewicz,
    • Jamie Marshall,
    • Francesca Meschi,
    • Christopher J. O'Keefe,
    • Heather Ordonez,
    • Pranav Patel,
    • Andrew Price,
    • Ariel Royall,
    • Elise Ruark,
    • Sheila Seal,
    • Michael Schnall-Levin,
    • Preyas Shah,
    • David Stafford,
    • Stephen Williams,
    • Indira Wu,
    • Andrew Wei Xu,
    • Nazneen Rahman,
    • Daniel MacArthur,
    • and Deanna M. Church
    Genome Res. April 2019 29: 635-645; Published in Advance March 20, 2019, doi:10.1101/gr.234443.118
    OPEN ACCESS ARTICLE
  4. Research: Base-specific mutational intolerance near splice sites clarifies the role of nonessential splice nucleotides
    • Sidi Zhang,
    • Kaitlin E. Samocha,
    • Manuel A. Rivas,
    • Konrad J. Karczewski,
    • Emma Daly,
    • Ben Schmandt,
    • Benjamin M. Neale,
    • Daniel G. MacArthur,
    • and Mark J. Daly
    Genome Res. July 2018 28: 968-974; Published in Advance June 1, 2018, doi:10.1101/gr.231902.117
  5. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  6. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  7. Research: The landscape of genomic imprinting across diverse adult human tissues
    • Yael Baran,
    • Meena Subramaniam,
    • Anne Biton,
    • Taru Tukiainen,
    • Emily K. Tsang,
    • Manuel A. Rivas,
    • Matti Pirinen,
    • Maria Gutierrez-Arcelus,
    • Kevin S. Smith,
    • Kim R. Kukurba,
    • Rui Zhang,
    • Celeste Eng,
    • Dara G. Torgerson,
    • Cydney Urbanek,
    • the GTEx Consortium,
    • Jin Billy Li,
    • Jose R. Rodriguez-Santana,
    • Esteban G. Burchard,
    • Max A. Seibold,
    • Daniel G. MacArthur,
    • Stephen B. Montgomery,
    • Noah A. Zaitlen,
    • and Tuuli Lappalainen
    Genome Res. July 2015 25: 927-936; Published in Advance May 7, 2015, doi:10.1101/gr.192278.115
    OPEN ACCESS ARTICLE
  8. Research: The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
    • Stephen B. Montgomery,
    • David L. Goode,
    • Erika Kvikstad,
    • Cornelis A. Albers,
    • Zhengdong D. Zhang,
    • Xinmeng Jasmine Mu,
    • Guruprasad Ananda,
    • Bryan Howie,
    • Konrad J. Karczewski,
    • Kevin S. Smith,
    • Vanessa Anaya,
    • Rhea Richardson,
    • Joe Davis,
    • The 1000 Genomes Project Consortium,
    • Daniel G. MacArthur,
    • Arend Sidow,
    • Laurent Duret,
    • Mark Gerstein,
    • Kateryna D. Makova,
    • Jonathan Marchini,
    • Gil McVean,
    • and Gerton Lunter
    Genome Res. May 2013 23: 749-761; Published in Advance March 11, 2013, doi:10.1101/gr.148718.112
    OPEN ACCESS ARTICLE
  9. Resource: Dindel: Accurate indel calls from short-read data
    • Cornelis A. Albers,
    • Gerton Lunter,
    • Daniel G. MacArthur,
    • Gilean McVean,
    • Willem H. Ouwehand,
    • and Richard Durbin
    Genome Res. June 2011 21: 961-973; Published in Advance October 27, 2010, doi:10.1101/gr.112326.110
    OPEN ACCESS ARTICLE
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