Searching journal content for D R Smith in author.

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  1. Resource: Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions
    • Rodrigo P. Baptista,
    • Yiran Li,
    • Adam Sateriale,
    • Mandy J. Sanders,
    • Karen L. Brooks,
    • Alan Tracey,
    • Brendan R.E. Ansell,
    • Aaron R. Jex,
    • Garrett W. Cooper,
    • Ethan D. Smith,
    • Rui Xiao,
    • Jennifer E. Dumaine,
    • Peter Georgeson,
    • Bernard J. Pope,
    • Matthew Berriman,
    • Boris Striepen,
    • James A. Cotton,
    • and Jessica C. Kissinger
    Genome Res. January 2022 32: 203-213; Published in Advance November 11, 2021, doi:10.1101/gr.275325.121
    OPEN ACCESS ARTICLE
  2. Method: Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells
    • Arshad H. Khan,
    • Andy Lin,
    • Richard T. Wang,
    • Joshua S. Bloom,
    • Kenneth Lange,
    • and Desmond J. Smith
    Genome Res. October 2020 30: 1458-1467; Published in Advance September 2, 2020, doi:10.1101/gr.262204.120
  3. Method: Improved discovery of genetic interactions using CRISPRiSeq across multiple environments
    • Mia Jaffe,
    • Adam Dziulko,
    • Justin D. Smith,
    • Robert P. St.Onge,
    • Sasha F. Levy,
    • and Gavin Sherlock
    Genome Res. April 2019 29: 668-681; Published in Advance February 19, 2019, doi:10.1101/gr.246603.118
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: Evolutionary expansion of DNA hypomethylation in the mammalian germline genome
    • Jianghan Qu,
    • Emily Hodges,
    • Antoine Molaro,
    • Pascal Gagneux,
    • Matthew D. Dean,
    • Gregory J. Hannon,
    • and Andrew D. Smith
    Genome Res. May 2018 28: 766.2; doi:10.1101/gr.236885.118
    OPEN ACCESS ARTICLE
  5. Research: Evolutionary expansion of DNA hypomethylation in the mammalian germline genome
    • Jianghan Qu,
    • Emily Hodges,
    • Antoine Molaro,
    • Pascal Gagneux,
    • Matthew D. Dean,
    • Gregory J. Hannon,
    • and Andrew D. Smith
    Genome Res. February 2018 28: 145-158; Published in Advance December 19, 2017, doi:10.1101/gr.225896.117
  6. Research: The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
    • Cheng Xue,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Gloria L. Fawcett,
    • Xiaoming Liu,
    • Simon White,
    • Mahmoud Dahdouli,
    • David Rio Deiros,
    • Jennifer E. Below,
    • William Salerno,
    • Laura Cox,
    • Guoping Fan,
    • Betsy Ferguson,
    • Julie Horvath,
    • Zach Johnson,
    • Sree Kanthaswamy,
    • H. Michael Kubisch,
    • Dahai Liu,
    • Michael Platt,
    • David G. Smith,
    • Binghua Sun,
    • Eric J. Vallender,
    • Feng Wang,
    • Roger W. Wiseman,
    • Rui Chen,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Fuli Yu,
    • and Jeffrey Rogers
    Genome Res. December 2016 26: 1651-1662; Published in Advance October 17, 2016, doi:10.1101/gr.204255.116
    OPEN ACCESS ARTICLE
  7. Research: De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
    • Felix Schlesinger,
    • Andrew D. Smith,
    • Thomas R. Gingeras,
    • Gregory J. Hannon,
    • and Emily Hodges
    Genome Res. October 2013 23: 1601-1614; Published in Advance June 28, 2013, doi:10.1101/gr.157271.113
  8. Research: Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
    • Daniel F. Simola,
    • Lothar Wissler,
    • Greg Donahue,
    • Robert M. Waterhouse,
    • Martin Helmkampf,
    • Julien Roux,
    • Sanne Nygaard,
    • Karl M. Glastad,
    • Darren E. Hagen,
    • Lumi Viljakainen,
    • Justin T. Reese,
    • Brendan G. Hunt,
    • Dan Graur,
    • Eran Elhaik,
    • Evgenia V. Kriventseva,
    • Jiayu Wen,
    • Brian J. Parker,
    • Elizabeth Cash,
    • Eyal Privman,
    • Christopher P. Childers,
    • Monica C. Muñoz-Torres,
    • Jacobus J. Boomsma,
    • Erich Bornberg-Bauer,
    • Cameron R. Currie,
    • Christine G. Elsik,
    • Garret Suen,
    • Michael A.D. Goodisman,
    • Laurent Keller,
    • Jürgen Liebig,
    • Alan Rawls,
    • Danny Reinberg,
    • Chris D. Smith,
    • Chris R. Smith,
    • Neil Tsutsui,
    • Yannick Wurm,
    • Evgeny M. Zdobnov,
    • Shelley L. Berger,
    • and Jürgen Gadau
    Genome Res. August 2013 23: 1235-1247; Published in Advance May 1, 2013, doi:10.1101/gr.155408.113
  9. Research: Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance
    • Jingfeng Li,
    • Keiko Akagi,
    • Yongjun Hu,
    • Anna L. Trivett,
    • Christopher J.W. Hlynialuk,
    • Deborah A. Swing,
    • Natalia Volfovsky,
    • Tamara C. Morgan,
    • Yelena Golubeva,
    • Robert M. Stephens,
    • David E. Smith,
    • and David E. Symer
    Genome Res. May 2012 22: 870-884; Published in Advance February 23, 2012, doi:10.1101/gr.130740.111
  10. Research: Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania
    • Matthew B. Rogers,
    • James D. Hilley,
    • Nicholas J. Dickens,
    • Jon Wilkes,
    • Paul A. Bates,
    • Daniel P. Depledge,
    • David Harris,
    • Yerim Her,
    • Pawel Herzyk,
    • Hideo Imamura,
    • Thomas D. Otto,
    • Mandy Sanders,
    • Kathy Seeger,
    • Jean-Claude Dujardin,
    • Matthew Berriman,
    • Deborah F. Smith,
    • Christiane Hertz-Fowler,
    • and Jeremy C. Mottram
    Genome Res. December 2011 21: 2129-2142; Published in Advance October 28, 2011, doi:10.1101/gr.122945.111
    OPEN ACCESS ARTICLE
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