Searching journal content for D M Muzny in author.

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  1. Research: Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
    • Jennifer F. Hughes,
    • Helen Skaletsky,
    • Tatyana Pyntikova,
    • Natalia Koutseva,
    • Terje Raudsepp,
    • Laura G. Brown,
    • Daniel W. Bellott,
    • Ting-Jan Cho,
    • Shannon Dugan-Rocha,
    • Ziad Khan,
    • Colin Kremitzki,
    • Catrina Fronick,
    • Tina A. Graves-Lindsay,
    • Lucinda Fulton,
    • Wesley C. Warren,
    • Richard K. Wilson,
    • Elaine Owens,
    • James E. Womack,
    • William J. Murphy,
    • Donna M. Muzny,
    • Kim C. Worley,
    • Bhanu P. Chowdhary,
    • Richard A. Gibbs,
    • and David C. Page
    Genome Res. December 2020 30: 1716-1726; Published in Advance November 18, 2020, doi:10.1101/gr.269902.120
  2. Research: Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
    • Richard J. Wang,
    • Gregg W.C. Thomas,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Harshavardhan Doddapaneni,
    • Donna M. Muzny,
    • John P. Capitanio,
    • Predrag Radivojac,
    • Jeffrey Rogers,
    • and Matthew W. Hahn
    Genome Res. June 2020 30: 826-834; Published in Advance May 27, 2020, doi:10.1101/gr.255174.119
  3. Research: The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
    • Cheng Xue,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Gloria L. Fawcett,
    • Xiaoming Liu,
    • Simon White,
    • Mahmoud Dahdouli,
    • David Rio Deiros,
    • Jennifer E. Below,
    • William Salerno,
    • Laura Cox,
    • Guoping Fan,
    • Betsy Ferguson,
    • Julie Horvath,
    • Zach Johnson,
    • Sree Kanthaswamy,
    • H. Michael Kubisch,
    • Dahai Liu,
    • Michael Platt,
    • David G. Smith,
    • Binghua Sun,
    • Eric J. Vallender,
    • Feng Wang,
    • Roger W. Wiseman,
    • Rui Chen,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Fuli Yu,
    • and Jeffrey Rogers
    Genome Res. December 2016 26: 1651-1662; Published in Advance October 17, 2016, doi:10.1101/gr.204255.116
    OPEN ACCESS ARTICLE
  4. Research: Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young
    • D. Nicole R. Methner,
    • Steven E. Scherer,
    • Katherine Welch,
    • Magdalena Walkiewicz,
    • Christine M. Eng,
    • John W. Belmont,
    • Mark C. Powell,
    • Viktoriya Korchina,
    • Harsha Vardhan Doddapaneni,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Dwayne A. Wolf,
    • Luis A. Sanchez,
    • and Roger Kahn
    Genome Res. September 2016 26: 1170-1177; Published in Advance July 19, 2016, doi:10.1101/gr.195800.115
  5. Research: Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
    • Eve Shinbrot,
    • Erin E. Henninger,
    • Nils Weinhold,
    • Kyle R. Covington,
    • A. Yasemin Göksenin,
    • Nikolaus Schultz,
    • Hsu Chao,
    • HarshaVardhan Doddapaneni,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Chris Sander,
    • Zachary F. Pursell,
    • and David A. Wheeler
    Genome Res. November 2014 24: 1740-1750; Published in Advance September 16, 2014, doi:10.1101/gr.174789.114
  6. Resource: Comparative validation of the D. melanogaster modENCODE transcriptome annotation
    • Zhen-Xia Chen,
    • David Sturgill,
    • Jiaxin Qu,
    • Huaiyang Jiang,
    • Soo Park,
    • Nathan Boley,
    • Ana Maria Suzuki,
    • Anthony R. Fletcher,
    • David C. Plachetzki,
    • Peter C. FitzGerald,
    • Carlo G. Artieri,
    • Joel Atallah,
    • Olga Barmina,
    • James B. Brown,
    • Kerstin P. Blankenburg,
    • Emily Clough,
    • Abhijit Dasgupta,
    • Sai Gubbala,
    • Yi Han,
    • Joy C. Jayaseelan,
    • Divya Kalra,
    • Yoo-Ah Kim,
    • Christie L. Kovar,
    • Sandra L. Lee,
    • Mingmei Li,
    • James D. Malley,
    • John H. Malone,
    • Tittu Mathew,
    • Nicolas R. Mattiuzzo,
    • Mala Munidasa,
    • Donna M. Muzny,
    • Fiona Ongeri,
    • Lora Perales,
    • Teresa M. Przytycka,
    • Ling-Ling Pu,
    • Garrett Robinson,
    • Rebecca L. Thornton,
    • Nehad Saada,
    • Steven E. Scherer,
    • Harold E. Smith,
    • Charles Vinson,
    • Crystal B. Warner,
    • Kim C. Worley,
    • Yuan-Qing Wu,
    • Xiaoyan Zou,
    • Peter Cherbas,
    • Manolis Kellis,
    • Michael B. Eisen,
    • Fabio Piano,
    • Karin Kionte,
    • David H. Fitch,
    • Paul W. Sternberg,
    • Asher D. Cutter,
    • Michael O. Duff,
    • Roger A. Hoskins,
    • Brenton R. Graveley,
    • Richard A. Gibbs,
    • Peter J. Bickel,
    • Artyom Kopp,
    • Piero Carninci,
    • Susan E. Celniker,
    • Brian Oliver,
    • and Stephen Richards
    Genome Res. July 2014 24: 1209-1223; Published in Advance July 1, 2014, doi:10.1101/gr.159384.113
    OPEN ACCESS ARTICLE
  7. Resource: Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
    • Wen Huang,
    • Andreas Massouras,
    • Yutaka Inoue,
    • Jason Peiffer,
    • Miquel Ràmia,
    • Aaron M. Tarone,
    • Lavanya Turlapati,
    • Thomas Zichner,
    • Dianhui Zhu,
    • Richard F. Lyman,
    • Michael M. Magwire,
    • Kerstin Blankenburg,
    • Mary Anna Carbone,
    • Kyle Chang,
    • Lisa L. Ellis,
    • Sonia Fernandez,
    • Yi Han,
    • Gareth Highnam,
    • Carl E. Hjelmen,
    • John R. Jack,
    • Mehwish Javaid,
    • Joy Jayaseelan,
    • Divya Kalra,
    • Sandy Lee,
    • Lora Lewis,
    • Mala Munidasa,
    • Fiona Ongeri,
    • Shohba Patel,
    • Lora Perales,
    • Agapito Perez,
    • LingLing Pu,
    • Stephanie M. Rollmann,
    • Robert Ruth,
    • Nehad Saada,
    • Crystal Warner,
    • Aneisa Williams,
    • Yuan-Qing Wu,
    • Akihiko Yamamoto,
    • Yiqing Zhang,
    • Yiming Zhu,
    • Robert R.H. Anholt,
    • Jan O. Korbel,
    • David Mittelman,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Antonio Barbadilla,
    • J. Spencer Johnston,
    • Eric A. Stone,
    • Stephen Richards,
    • Bart Deplancke,
    • and Trudy F.C. Mackay
    Genome Res. July 2014 24: 1193-1208; Published in Advance April 8, 2014, doi:10.1101/gr.171546.113
    OPEN ACCESS ARTICLE
  8. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
  9. LETTER: A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
    • Oliver A. Hampton,
    • Petra Den Hollander,
    • Christopher A. Miller,
    • David A. Delgado,
    • Jian Li,
    • Cristian Coarfa,
    • Ronald A. Harris,
    • Stephen Richards,
    • Steven E. Scherer,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Adrian V. Lee,
    • and Aleksandar Milosavljevic
    Genome Res. February 2009 19: 167-177; Published in Advance December 3, 2008, doi:10.1101/gr.080259.108
    OPEN ACCESS ARTICLE
  10. LETTER: Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5′-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
    • Jeffrey G. Reid,
    • Ankur K. Nagaraja,
    • Francis C. Lynn,
    • Rafal B. Drabek,
    • Donna M. Muzny,
    • Chad A. Shaw,
    • Michelle K. Weiss,
    • Arash O. Naghavi,
    • Mahjabeen Khan,
    • Huifeng Zhu,
    • Jayantha Tennakoon,
    • Gemunu H. Gunaratne,
    • David B. Corry,
    • Jonathan Miller,
    • Michael T. McManus,
    • Michael S. German,
    • Richard A. Gibbs,
    • Martin M. Matzuk,
    • and Preethi H. Gunaratne
    Genome Res. October 2008 18: 1571-1581; Published in Advance July 9, 2008, doi:10.1101/gr.078246.108
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