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Method: Chromatin interaction–aware gene regulatory modeling with graph attention networks

Genome Res. May 2022 32: 930-944; Published in Advance April 8, 2022, doi:10.1101/gr.275870.121

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Method: Linking signaling pathways to transcriptional programs in breast cancer

Genome Res. November 2014 24: 1869-1880; Published in Advance September 2, 2014, doi:10.1101/gr.173039.114

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Method: Sequence and chromatin determinants of cell-type–specific transcription factor binding

Genome Res. September 2012 22: 1723-1734; doi:10.1101/gr.127712.111

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Method: Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

Genome Res. February 2011 21: 286-300; Published in Advance December 22, 2010, doi:10.1101/gr.113050.110

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ARTICLE: Dichotomous splicing signals in exon flanks

Genome Res. June 2005 15: 768-779; doi:10.1101/gr.3217705

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LETTER: Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification

Genome Res. December 2003 13: 2637-2650; doi:10.1101/gr.1679003

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