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Charles Danko
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Mini-Review
:
Revisiting models of enhancer–promoter communication in gene regulation
Gilad Barshad
and
Charles G. Danko
Genome Res.
June 2025
35
:
1277
-
1286
;
doi:
10.1101/gr.278389.123
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Corrigendum
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Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
Amit Blumberg
,
Edward J. Rice
,
Anshul Kundaje
,
Charles G. Danko
,
and
Dan Mishmar
Genome Res.
April 2019
29
:
710.1
;
doi:
10.1101/gr.248971.119
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Method
:
Identification of regulatory elements from nascent transcription using dREG
Zhong Wang
,
Tinyi Chu
,
Lauren A. Choate
,
and
Charles G. Danko
Genome Res.
February 2019
29
:
293
-
303
;
Published in Advance
December 20, 2018
,
doi:
10.1101/gr.238279.118
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Research
:
A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization
Amit Blumberg
,
Charles G. Danko
,
Anshul Kundaje
,
and
Dan Mishmar
Genome Res.
August 2018
28
:
1158
-
1168
;
Published in Advance
July 12, 2018
,
doi:
10.1101/gr.230409.117
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Research
:
Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol
Noah Dukler
,
Gregory T. Booth
,
Yi-Fei Huang
,
Nathaniel Tippens
,
Colin T. Waters
,
Charles G. Danko
,
John T. Lis
,
and
Adam Siepel
Genome Res.
November 2017
27
:
1816
-
1829
;
Published in Advance
October 12, 2017
,
doi:
10.1101/gr.222935.117
Abstract
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Research
:
Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
Amit Blumberg
,
Edward J. Rice
,
Anshul Kundaje
,
Charles G. Danko
,
and
Dan Mishmar
Genome Res.
March 2017
27
:
362
-
373
;
Published in Advance
January 3, 2017
,
doi:
10.1101/gr.209924.116
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Research
:
Enhancer transcripts mark active estrogen receptor binding sites
Nasun Hah
,
Shino Murakami
,
Anusha Nagari
,
Charles G. Danko
,
and
W. Lee Kraus
Genome Res.
August 2013
23
:
1210
-
1223
;
Published in Advance
May 1, 2013
,
doi:
10.1101/gr.152306.112
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Single-cell gene signature scoring
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