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Chao Cheng
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.
Displaying results 1-4 of
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Research
:
Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders
Kaifang Pang
,
Li Wang
,
Wei Wang
,
Jian Zhou
,
Chao Cheng
,
Kihoon Han
,
Huda Y. Zoghbi
,
and
Zhandong Liu
Genome Res.
June 2020
30
:
835
-
848
;
Published in Advance
June 18, 2020
,
doi:
10.1101/gr.254987.119
Abstract
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Resource
:
Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain
Siling Liu
,
Zhengbo Wang
,
Dong Chen
,
Bowen Zhang
,
Ren-Rong Tian
,
Jing Wu
,
Ying Zhang
,
Kaiyu Xu
,
Liu-Meng Yang
,
Chao Cheng
,
Jian Ma
,
Longbao Lv
,
Yong-Tang Zheng
,
Xintian Hu
,
Yi Zhang
,
Xiangting Wang
,
and
Jiali Li
Genome Res.
September 2017
27
:
1608
-
1620
;
Published in Advance
July 7, 2017
,
doi:
10.1101/gr.217463.116
Abstract
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Research
:
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
Chao Cheng
,
Roger Alexander
,
Renqiang Min
,
Jing Leng
,
Kevin Y. Yip
,
Joel Rozowsky
,
Koon-Kiu Yan
,
Xianjun Dong
,
Sarah Djebali
,
Yijun Ruan
,
Carrie A. Davis
,
Piero Carninci
,
Timo Lassman
,
Thomas R. Gingeras
,
Roderic Guigó
,
Ewan Birney
,
Zhiping Weng
,
Michael Snyder
,
and
Mark Gerstein
Genome Res.
September 2012
22
:
1658
-
1667
;
doi:
10.1101/gr.136838.111
Abstract
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Method
:
Prediction and characterization of noncoding RNAs in
C. elegans
by integrating conservation, secondary structure, and high-throughput sequencing and array data
Zhi John Lu
,
Kevin Y. Yip
,
Guilin Wang
,
Chong Shou
,
LaDeana W. Hillier
,
Ekta Khurana
,
Ashish Agarwal
,
Raymond Auerbach
,
Joel Rozowsky
,
Chao Cheng
,
Masaomi Kato
,
David M. Miller
,
Frank Slack
,
Michael Snyder
,
Robert H. Waterston
,
Valerie Reinke
,
and
Mark B. Gerstein
Genome Res.
February 2011
21
:
276
-
285
;
Published in Advance
December 22, 2010
,
doi:
10.1101/gr.110189.110
Abstract
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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