Searching journal content for Can Alkan in author.

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  1. Method: Polishing copy number variant calls on exome sequencing data via deep learning
    • Furkan Özden,
    • Can Alkan,
    • and A. Ercüment Çiçek
    Genome Res. June 2022 32: 1170-1182; Published in Advance June 13, 2022, doi:10.1101/gr.274845.120
  2. Perspective: Realizing the potential of blockchain technologies in genomics
    • Halil Ibrahim Ozercan,
    • Atalay Mert Ileri,
    • Erman Ayday,
    • and Can Alkan
    Genome Res. September 2018 28: 1255-1263; Published in Advance August 3, 2018, doi:10.1101/gr.207464.116
    OPEN ACCESS ARTICLE
  3. Method: Reconstructing complex regions of genomes using long-read sequencing technology
    • John Huddleston,
    • Swati Ranade,
    • Maika Malig,
    • Francesca Antonacci,
    • Mark Chaisson,
    • Lawrence Hon,
    • Peter H. Sudmant,
    • Tina A. Graves,
    • Can Alkan,
    • Megan Y. Dennis,
    • Richard K. Wilson,
    • Stephen W. Turner,
    • Jonas Korlach,
    • and Evan E. Eichler
    Genome Res. April 2014 24: 688-696; Published in Advance January 13, 2014, doi:10.1101/gr.168450.113
  4. Resource: Copy number variation of individual cattle genomes using next-generation sequencing
    • Derek M. Bickhart,
    • Yali Hou,
    • Steven G. Schroeder,
    • Can Alkan,
    • Maria Francesca Cardone,
    • Lakshmi K. Matukumalli,
    • Jiuzhou Song,
    • Robert D. Schnabel,
    • Mario Ventura,
    • Jeremy F. Taylor,
    • Jose Fernando Garcia,
    • Curtis P. Van Tassell,
    • Tad S. Sonstegard,
    • Evan E. Eichler,
    • and George E. Liu
    Genome Res. April 2012 22: 778-790; Published in Advance February 2, 2012, doi:10.1101/gr.133967.111
  5. Research: Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee
    • Mario Ventura,
    • Claudia R. Catacchio,
    • Can Alkan,
    • Tomas Marques-Bonet,
    • Saba Sajjadian,
    • Tina A. Graves,
    • Fereydoun Hormozdiari,
    • Arcadi Navarro,
    • Maika Malig,
    • Carl Baker,
    • Choli Lee,
    • Emily H. Turner,
    • Lin Chen,
    • Jeffrey M. Kidd,
    • Nicoletta Archidiacono,
    • Jay Shendure,
    • Richard K. Wilson,
    • and Evan E. Eichler
    Genome Res. October 2011 21: 1640-1649; Published in Advance June 17, 2011, doi:10.1101/gr.124461.111
  6. Research: Alu repeat discovery and characterization within human genomes
    • Fereydoun Hormozdiari,
    • Can Alkan,
    • Mario Ventura,
    • Iman Hajirasouliha,
    • Maika Malig,
    • Faraz Hach,
    • Deniz Yorukoglu,
    • Phuong Dao,
    • Marzieh Bakhshi,
    • S. Cenk Sahinalp,
    • and Evan E. Eichler
    Genome Res. June 2011 21: 840-849; Published in Advance December 3, 2010, doi:10.1101/gr.115956.110
  7. Research: Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X
    • Di Kim Nguyen,
    • Fan Yang,
    • Rajinder Kaul,
    • Can Alkan,
    • Anthony Antonellis,
    • Karen F. Friery,
    • Baoli Zhu,
    • Pieter J. de Jong,
    • and Christine M. Disteche
    Genome Res. March 2011 21: 402-409; Published in Advance January 31, 2011, doi:10.1101/gr.108563.110
  8. Method: Genome-wide characterization of centromeric satellites from multiple mammalian genomes
    • Can Alkan,
    • Maria Francesca Cardone,
    • Claudia Rita Catacchio,
    • Francesca Antonacci,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Stefania Purgato,
    • Monica Zoli,
    • Giuliano Della Valle,
    • Evan E. Eichler,
    • and Mario Ventura
    Genome Res. January 2011 21: 137-145; Published in Advance November 16, 2010, doi:10.1101/gr.111278.110
  9. Methods: Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    • Kevin Judd McKernan,
    • Heather E. Peckham,
    • Gina L. Costa,
    • Stephen F. McLaughlin,
    • Yutao Fu,
    • Eric F. Tsung,
    • Christopher R. Clouser,
    • Cisyla Duncan,
    • Jeffrey K. Ichikawa,
    • Clarence C. Lee,
    • Zheng Zhang,
    • Swati S. Ranade,
    • Eileen T. Dimalanta,
    • Fiona C. Hyland,
    • Tanya D. Sokolsky,
    • Lei Zhang,
    • Andrew Sheridan,
    • Haoning Fu,
    • Cynthia L. Hendrickson,
    • Bin Li,
    • Lev Kotler,
    • Jeremy R. Stuart,
    • Joel A. Malek,
    • Jonathan M. Manning,
    • Alena A. Antipova,
    • Damon S. Perez,
    • Michael P. Moore,
    • Kathleen C. Hayashibara,
    • Michael R. Lyons,
    • Robert E. Beaudoin,
    • Brittany E. Coleman,
    • Michael W. Laptewicz,
    • Adam E. Sannicandro,
    • Michael D. Rhodes,
    • Rajesh K. Gottimukkala,
    • Shan Yang,
    • Vineet Bafna,
    • Ali Bashir,
    • Andrew MacBride,
    • Can Alkan,
    • Jeffrey M. Kidd,
    • Evan E. Eichler,
    • Martin G. Reese,
    • Francisco M. De La Vega,
    • and Alan P. Blanchard
    Genome Res. September 2009 19: 1527-1541; Published in Advance June 22, 2009, doi:10.1101/gr.091868.109
    OPEN ACCESS ARTICLE
  10. Methods: Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
    • Fereydoun Hormozdiari,
    • Can Alkan,
    • Evan E. Eichler,
    • and S. Cenk Sahinalp
    Genome Res. July 2009 19: 1270-1278; Published in Advance May 15, 2009, doi:10.1101/gr.088633.108
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