Searching journal content for Bruce W. Birren in author.

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  1. Research: Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
    • Aleksandar D. Kostic,
    • Dirk Gevers,
    • Chandra Sekhar Pedamallu,
    • Monia Michaud,
    • Fujiko Duke,
    • Ashlee M. Earl,
    • Akinyemi I. Ojesina,
    • Joonil Jung,
    • Adam J. Bass,
    • Josep Tabernero,
    • José Baselga,
    • Chen Liu,
    • Ramesh A. Shivdasani,
    • Shuji Ogino,
    • Bruce W. Birren,
    • Curtis Huttenhower,
    • Wendy S. Garrett,
    • and Matthew Meyerson
    Genome Res. February 2012 22: 292-298; Published in Advance October 18, 2011, doi:10.1101/gr.126573.111
  2. Resource: Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Brian J. Haas,
    • Dirk Gevers,
    • Ashlee M. Earl,
    • Mike Feldgarden,
    • Doyle V. Ward,
    • Georgia Giannoukos,
    • Dawn Ciulla,
    • Diana Tabbaa,
    • Sarah K. Highlander,
    • Erica Sodergren,
    • Barbara Methé,
    • Todd Z. DeSantis,
    • The Human Microbiome Consortium,
    • Joseph F. Petrosino,
    • Rob Knight,
    • and Bruce W. Birren
    Genome Res. March 2011 21: 494-504; Published in Advance January 6, 2011, doi:10.1101/gr.112730.110
    OPEN ACCESS ARTICLE
  3. Research: Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
    • Daniel E. Neafsey,
    • Bridget M. Barker,
    • Thomas J. Sharpton,
    • Jason E. Stajich,
    • Daniel J. Park,
    • Emily Whiston,
    • Chiung-Yu Hung,
    • Cody McMahan,
    • Jared White,
    • Sean Sykes,
    • David Heiman,
    • Sarah Young,
    • Qiandong Zeng,
    • Amr Abouelleil,
    • Lynne Aftuck,
    • Daniel Bessette,
    • Adam Brown,
    • Michael FitzGerald,
    • Annie Lui,
    • J. Pendexter Macdonald,
    • Margaret Priest,
    • Marc J. Orbach,
    • John N. Galgiani,
    • Theo N. Kirkland,
    • Garry T. Cole,
    • Bruce W. Birren,
    • Matthew R. Henn,
    • John W. Taylor,
    • and Steven D. Rounsley
    Genome Res. July 2010 20: 938-946; Published in Advance June 1, 2010, doi:10.1101/gr.103911.109
  4. Letter: Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
    • Thomas J. Sharpton,
    • Jason E. Stajich,
    • Steven D. Rounsley,
    • Malcolm J. Gardner,
    • Jennifer R. Wortman,
    • Vinita S. Jordar,
    • Rama Maiti,
    • Chinnappa D. Kodira,
    • Daniel E. Neafsey,
    • Qiandong Zeng,
    • Chiung-Yu Hung,
    • Cody McMahan,
    • Anna Muszewska,
    • Marcin Grynberg,
    • M. Alejandra Mandel,
    • Ellen M. Kellner,
    • Bridget M. Barker,
    • John N. Galgiani,
    • Marc J. Orbach,
    • Theo N. Kirkland,
    • Garry T. Cole,
    • Matthew R. Henn,
    • Bruce W. Birren,
    • and John W. Taylor
    Genome Res. October 2009 19: 1722-1731; Published in Advance August 28, 2009, doi:10.1101/gr.087551.108
    OPEN ACCESS ARTICLE
  5. LETTER: Uneven chromosome contraction and expansion in the maize genome
    • Rémy Bruggmann,
    • Arvind K. Bharti,
    • Heidrun Gundlach,
    • Jinsheng Lai,
    • Sarah Young,
    • Ana C. Pontaroli,
    • Fusheng Wei,
    • Georg Haberer,
    • Galina Fuks,
    • Chunguang Du,
    • Christina Raymond,
    • Matt C. Estep,
    • Renyi Liu,
    • Jeffrey L. Bennetzen,
    • Agnes P. Chan,
    • Pablo D. Rabinowicz,
    • John Quackenbush,
    • W. Brad Barbazuk,
    • Rod A. Wing,
    • Bruce Birren,
    • Chad Nusbaum,
    • Steve Rounsley,
    • Klaus F.X. Mayer,
    • and Joachim Messing
    Genome Res. October 2006 16: 1241-1251; Published in Advance August 10, 2006, doi:10.1101/gr.5338906
  6. PERSPECTIVE: Genomics of the fungal kingdom: Insights into eukaryotic biology
    • James E. Galagan,
    • Matthew R. Henn,
    • Li-Jun Ma,
    • Christina A. Cuomo,
    • and Bruce Birren
    Genome Res. December 2005 15: 1620-1631; doi:10.1101/gr.3767105
  7. Methods: Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
    • Jade P. Vinson,
    • David B. Jaffe,
    • Keith O'Neill,
    • Elinor K. Karlsson,
    • Nicole Stange-Thomann,
    • Scott Anderson,
    • Jill P. Mesirov,
    • Nori Satoh,
    • Yutaka Satou,
    • Chad Nusbaum,
    • Bruce Birren,
    • James E. Galagan,
    • and Eric S. Lander
    Genome Res. August 2005 15: 1127-1135; doi:10.1101/gr.3722605
  8. ARTICLE: The Complete Genome and Proteome of Mycoplasma mobile
    • Jacob D. Jaffe,
    • Nicole Stange-Thomann,
    • Cherylyn Smith,
    • David DeCaprio,
    • Sheila Fisher,
    • Jonathan Butler,
    • Sarah Calvo,
    • Tim Elkins,
    • Michael G. FitzGerald,
    • Nabil Hafez,
    • Chinnappa D. Kodira,
    • John Major,
    • Shunguang Wang,
    • Jane Wilkinson,
    • Robert Nicol,
    • Chad Nusbaum,
    • Bruce Birren,
    • Howard C. Berg,
    • and George M. Church
    Genome Res. August 2004 14: 1447-1461; doi:10.1101/gr.2674004
  9. LETTER: Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene
    • Armand J. MacMurray,
    • Daniel H. Moralejo,
    • Anne E. Kwitek,
    • Elizabeth A. Rutledge,
    • Brian Van Yserloo,
    • Paul Gohlke,
    • Sara J. Speros,
    • Ben Snyder,
    • Jonathan Schaefer,
    • Sabine Bieg,
    • Jianjie Jiang,
    • Ruth A. Ettinger,
    • Jessica Fuller,
    • Terri L. Daniels,
    • Anna Pettersson,
    • Kimberly Orlebeke,
    • Bruce Birren,
    • Howard J. Jacob,
    • Eric S. Lander,
    • and Åke Lernmark
    Genome Res. July 1, 2002 12: 1029-1039; doi:10.1101/gr.412702
  10. ARTICLE: Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs
    • Sung-Sup Park,
    • Paweł Stankiewicz,
    • Weimin Bi,
    • Christine Shaw,
    • Jessica Lehoczky,
    • Ken Dewar,
    • Bruce Birren,
    • and James R. Lupski
    Genome Res. May 1, 2002 12: 729-738; doi:10.1101/gr.82802
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