Searching journal content for Bronwen L. Aken in author.

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  1. Research: Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
    • David Thybert,
    • Maša Roller,
    • Fábio C.P. Navarro,
    • Ian Fiddes,
    • Ian Streeter,
    • Christine Feig,
    • David Martin-Galvez,
    • Mikhail Kolmogorov,
    • Václav Janoušek,
    • Wasiu Akanni,
    • Bronwen Aken,
    • Sarah Aldridge,
    • Varshith Chakrapani,
    • William Chow,
    • Laura Clarke,
    • Carla Cummins,
    • Anthony Doran,
    • Matthew Dunn,
    • Leo Goodstadt,
    • Kerstin Howe,
    • Matthew Howell,
    • Ambre-Aurore Josselin,
    • Robert C. Karn,
    • Christina M. Laukaitis,
    • Lilue Jingtao,
    • Fergal Martin,
    • Matthieu Muffato,
    • Stefanie Nachtweide,
    • Michael A. Quail,
    • Cristina Sisu,
    • Mario Stanke,
    • Klara Stefflova,
    • Cock Van Oosterhout,
    • Frederic Veyrunes,
    • Ben Ward,
    • Fengtang Yang,
    • Golbahar Yazdanifar,
    • Amonida Zadissa,
    • David J. Adams,
    • Alvis Brazma,
    • Mark Gerstein,
    • Benedict Paten,
    • Son Pham,
    • Thomas M. Keane,
    • Duncan T. Odom,
    • and Paul Flicek
    Genome Res. April 2018 28: 448-459; Published in Advance March 21, 2018, doi:10.1101/gr.234096.117
    OPEN ACCESS ARTICLE
  2. Resource: The genome of the vervet (Chlorocebus aethiops sabaeus)
    • Wesley C. Warren,
    • Anna J. Jasinska,
    • Raquel García-Pérez,
    • Hannes Svardal,
    • Chad Tomlinson,
    • Mariano Rocchi,
    • Nicoletta Archidiacono,
    • Oronzo Capozzi,
    • Patrick Minx,
    • Michael J. Montague,
    • Kim Kyung,
    • LaDeana W. Hillier,
    • Milinn Kremitzki,
    • Tina Graves,
    • Colby Chiang,
    • Jennifer Hughes,
    • Nam Tran,
    • Yu Huang,
    • Vasily Ramensky,
    • Oi-wa Choi,
    • Yoon J. Jung,
    • Christopher A. Schmitt,
    • Nikoleta Juretic,
    • Jessica Wasserscheid,
    • Trudy R. Turner,
    • Roger W. Wiseman,
    • Jennifer J. Tuscher,
    • Julie A. Karl,
    • Jörn E. Schmitz,
    • Roland Zahn,
    • David H. O'Connor,
    • Eugene Redmond,
    • Alex Nisbett,
    • Béatrice Jacquelin,
    • Michaela C. Müller-Trutwin,
    • Jason M. Brenchley,
    • Michel Dione,
    • Martin Antonio,
    • Gary P. Schroth,
    • Jay R. Kaplan,
    • Matthew J. Jorgensen,
    • Gregg W.C. Thomas,
    • Matthew W. Hahn,
    • Brian J. Raney,
    • Bronwen Aken,
    • Rishi Nag,
    • Juergen Schmitz,
    • Gennady Churakov,
    • Angela Noll,
    • Roscoe Stanyon,
    • David Webb,
    • Francoise Thibaud-Nissen,
    • Magnus Nordborg,
    • Tomas Marques-Bonet,
    • Ken Dewar,
    • George M. Weinstock,
    • Richard K. Wilson,
    • and Nelson B. Freimer
    Genome Res. December 2015 25: 1921-1933; Published in Advance September 16, 2015, doi:10.1101/gr.192922.115
  3. Method: Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
    • Cédric Howald,
    • Andrea Tanzer,
    • Jacqueline Chrast,
    • Felix Kokocinski,
    • Thomas Derrien,
    • Nathalie Walters,
    • Jose M. Gonzalez,
    • Adam Frankish,
    • Bronwen L. Aken,
    • Thibaut Hourlier,
    • Jan-Hinnerk Vogel,
    • Simon White,
    • Stephen Searle,
    • Jennifer Harrow,
    • Tim J. Hubbard,
    • Roderic Guigó,
    • and Alexandre Reymond
    Genome Res. September 2012 22: 1698-1710; doi:10.1101/gr.134478.111
    OPEN ACCESS ARTICLE
  4. Resource: GENCODE: The reference human genome annotation for The ENCODE Project
    • Jennifer Harrow,
    • Adam Frankish,
    • Jose M. Gonzalez,
    • Electra Tapanari,
    • Mark Diekhans,
    • Felix Kokocinski,
    • Bronwen L. Aken,
    • Daniel Barrell,
    • Amonida Zadissa,
    • Stephen Searle,
    • If Barnes,
    • Alexandra Bignell,
    • Veronika Boychenko,
    • Toby Hunt,
    • Mike Kay,
    • Gaurab Mukherjee,
    • Jeena Rajan,
    • Gloria Despacio-Reyes,
    • Gary Saunders,
    • Charles Steward,
    • Rachel Harte,
    • Michael Lin,
    • Cédric Howald,
    • Andrea Tanzer,
    • Thomas Derrien,
    • Jacqueline Chrast,
    • Nathalie Walters,
    • Suganthi Balasubramanian,
    • Baikang Pei,
    • Michael Tress,
    • Jose Manuel Rodriguez,
    • Iakes Ezkurdia,
    • Jeltje van Baren,
    • Michael Brent,
    • David Haussler,
    • Manolis Kellis,
    • Alfonso Valencia,
    • Alexandre Reymond,
    • Mark Gerstein,
    • Roderic Guigó,
    • and Tim J. Hubbard
    Genome Res. September 2012 22: 1760-1774; doi:10.1101/gr.135350.111
    OPEN ACCESS ARTICLE
  5. Resource: The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    • Kim D. Pruitt,
    • Jennifer Harrow,
    • Rachel A. Harte,
    • Craig Wallin,
    • Mark Diekhans,
    • Donna R. Maglott,
    • Steve Searle,
    • Catherine M. Farrell,
    • Jane E. Loveland,
    • Barbara J. Ruef,
    • Elizabeth Hart,
    • Marie-Marthe Suner,
    • Melissa J. Landrum,
    • Bronwen Aken,
    • Sarah Ayling,
    • Robert Baertsch,
    • Julio Fernandez-Banet,
    • Joshua L. Cherry,
    • Val Curwen,
    • Michael DiCuccio,
    • Manolis Kellis,
    • Jennifer Lee,
    • Michael F. Lin,
    • Michael Schuster,
    • Andrew Shkeda,
    • Clara Amid,
    • Garth Brown,
    • Oksana Dukhanina,
    • Adam Frankish,
    • Jennifer Hart,
    • Bonnie L. Maidak,
    • Jonathan Mudge,
    • Michael R. Murphy,
    • Terence Murphy,
    • Jeena Rajan,
    • Bhanu Rajput,
    • Lillian D. Riddick,
    • Catherine Snow,
    • Charles Steward,
    • David Webb,
    • Janet A. Weber,
    • Laurens Wilming,
    • Wenyu Wu,
    • Ewan Birney,
    • David Haussler,
    • Tim Hubbard,
    • James Ostell,
    • Richard Durbin,
    • and David Lipman
    Genome Res. July 2009 19: 1316-1323; Published in Advance June 4, 2009, doi:10.1101/gr.080531.108
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