Searching journal content for Brian P. Walenz in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Method: Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding
    • Dmitry Antipov,
    • Mikko Rautiainen,
    • Sergey Nurk,
    • Brian P. Walenz,
    • Steven J. Solar,
    • Adam M. Phillippy,
    • and Sergey Koren
    Genome Res. July 2025 35: 1583-1594; Published in Advance May 19, 2025, doi:10.1101/gr.280383.124
    OPEN ACCESS ARTICLE
  3. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  4. Method: HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
    • Sergey Nurk,
    • Brian P. Walenz,
    • Arang Rhie,
    • Mitchell R. Vollger,
    • Glennis A. Logsdon,
    • Robert Grothe,
    • Karen H. Miga,
    • Evan E. Eichler,
    • Adam M. Phillippy,
    • and Sergey Koren
    Genome Res. September 2020 30: 1291-1305; Published in Advance August 14, 2020, doi:10.1101/gr.263566.120
    OPEN ACCESS ARTICLE
  5. Method: Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
    • Sergey Koren,
    • Brian P. Walenz,
    • Konstantin Berlin,
    • Jason R. Miller,
    • Nicholas H. Bergman,
    • and Adam M. Phillippy
    Genome Res. May 2017 27: 722-736; Published in Advance March 15, 2017, doi:10.1101/gr.215087.116
    OPEN ACCESS ARTICLE
  6. Methods: Gene and alternative splicing annotation with AIR
    • Liliana Florea,
    • Valentina Di Francesco,
    • Jason Miller,
    • Russell Turner,
    • Alison Yao,
    • Michael Harris,
    • Brian Walenz,
    • Clark Mobarry,
    • Gennady V. Merkulov,
    • Rosane Charlab,
    • Ian Dew,
    • Zuoming Deng,
    • Sorin Istrail,
    • Peter Li,
    • and Granger Sutton
    Genome Res. January 2005 15: 54-66; doi:10.1101/gr.2889405
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