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Brian P. Walenz
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Displaying results 1-6 of
6
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Method
:
Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding
Dmitry Antipov
,
Mikko Rautiainen
,
Sergey Nurk
,
Brian P. Walenz
,
Steven J. Solar
,
Adam M. Phillippy
,
and
Sergey Koren
Genome Res.
July 2025
35
:
1583
-
1594
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280383.124
Abstract
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Research
:
Gaps and complex structurally variant loci in phased genome assemblies
David Porubsky
,
Mitchell R. Vollger
,
William T. Harvey
,
Allison N. Rozanski
,
Peter Ebert
,
Glenn Hickey
,
Patrick Hasenfeld
,
Ashley D. Sanders
,
Catherine Stober
,
Human Pangenome Reference Consortium
,
Jan O. Korbel
,
Benedict Paten
,
Tobias Marschall
,
and
Evan E. Eichler
Genome Res.
April 2023
33
:
496
-
510
;
Published in Advance
May 10, 2023
,
doi:
10.1101/gr.277334.122
Abstract
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Method
:
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Sergey Nurk
,
Brian P. Walenz
,
Arang Rhie
,
Mitchell R. Vollger
,
Glennis A. Logsdon
,
Robert Grothe
,
Karen H. Miga
,
Evan E. Eichler
,
Adam M. Phillippy
,
and
Sergey Koren
Genome Res.
September 2020
30
:
1291
-
1305
;
Published in Advance
August 14, 2020
,
doi:
10.1101/gr.263566.120
Abstract
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Method
:
Canu: scalable and accurate long-read assembly via adaptive
k
-mer weighting and repeat separation
Sergey Koren
,
Brian P. Walenz
,
Konstantin Berlin
,
Jason R. Miller
,
Nicholas H. Bergman
,
and
Adam M. Phillippy
Genome Res.
May 2017
27
:
722
-
736
;
Published in Advance
March 15, 2017
,
doi:
10.1101/gr.215087.116
Abstract
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Methods
:
Gene and alternative splicing annotation with AIR
Liliana Florea
,
Valentina Di Francesco
,
Jason Miller
,
Russell Turner
,
Alison Yao
,
Michael Harris
,
Brian Walenz
,
Clark Mobarry
,
Gennady V. Merkulov
,
Rosane Charlab
,
Ian Dew
,
Zuoming Deng
,
Sorin Istrail
,
Peter Li
,
and
Granger Sutton
Genome Res.
January 2005
15
:
54
-
66
;
doi:
10.1101/gr.2889405
Abstract
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