Searching journal content for Brian J. Haas in author.

Displaying results 1-7 of 7
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  1. Method: Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution
    • Qian Qin,
    • Victoria Popic,
    • Kirsty Wienand,
    • Houlin Yu,
    • Emily White,
    • Akanksha Khorgade,
    • Asa Shin,
    • Christophe Georgescu,
    • Catarina D. Campbell,
    • Arthur Dondi,
    • Niko Beerenwinkel,
    • Francisca Vazquez,
    • Aziz M. Al'Khafaji,
    • and Brian J. Haas
    Genome Res. April 2025 35: 967-986; Published in Advance March 14, 2025, doi:10.1101/gr.279200.124
    OPEN ACCESS ARTICLE
  2. Method: De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data
    • Arthur Dondi,
    • Nico Borgsmüller,
    • Pedro F. Ferreira,
    • Brian J. Haas,
    • Francis Jacob,
    • Viola Heinzelmann-Schwarz,
    • Tumor Profiler Consortium,
    • and Niko Beerenwinkel
    Genome Res. April 2025 35: 900-913; Published in Advance March 19, 2025, doi:10.1101/gr.279281.124
    OPEN ACCESS ARTICLE
  3. Research: Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
    • Monika S. Kowalczyk,
    • Itay Tirosh,
    • Dirk Heckl,
    • Tata Nageswara Rao,
    • Atray Dixit,
    • Brian J. Haas,
    • Rebekka K. Schneider,
    • Amy J. Wagers,
    • Benjamin L. Ebert,
    • and Aviv Regev
    Genome Res. December 2015 25: 1860-1872; Published in Advance October 1, 2015, doi:10.1101/gr.192237.115
  4. Resource: Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Brian J. Haas,
    • Dirk Gevers,
    • Ashlee M. Earl,
    • Mike Feldgarden,
    • Doyle V. Ward,
    • Georgia Giannoukos,
    • Dawn Ciulla,
    • Diana Tabbaa,
    • Sarah K. Highlander,
    • Erica Sodergren,
    • Barbara Methé,
    • Todd Z. DeSantis,
    • The Human Microbiome Consortium,
    • Joseph F. Petrosino,
    • Rob Knight,
    • and Bruce W. Birren
    Genome Res. March 2011 21: 494-504; Published in Advance January 6, 2011, doi:10.1101/gr.112730.110
    OPEN ACCESS ARTICLE
  5. LETTER: Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis
    • Mulu Ayele,
    • Brian J. Haas,
    • Nikhil Kumar,
    • Hank Wu,
    • Yongli Xiao,
    • Susan Van Aken,
    • Teresa R. Utterback,
    • Jennifer R. Wortman,
    • Owen R. White,
    • and Christopher D. Town
    Genome Res. April 2005 15: 487-495; doi:10.1101/gr.3176505
  6. Methods: Computational Discovery of Internal Micro-Exons
    • Natalia Volfovsky,
    • Brian J. Haas,
    • and Steven L. Salzberg
    Genome Res. June 2003 13: 1216-1221; doi:10.1101/gr.677503
  7. ARTICLE: Gene Expression Analyses of Arabidopsis Chromosome 2 Using a Genomic DNA Amplicon Microarray
    • Heenam Kim,
    • Erik C. Snesrud,
    • Brian Haas,
    • Foo Cheung,
    • Christopher D. Town,
    • and John Quackenbush
    Genome Res. March 1, 2003 13: 327-340; doi:10.1101/gr.552003
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