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Bonnie Berger
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Displaying results 1-10 of
13
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Method
:
Graph-based deep reinforcement learning for haplotype assembly with Ralphi
Enzo Battistella
,
Anant Maheshwari
,
Barış Ekim
,
Bonnie Berger
,
and
Victoria Popic
Genome Res.
December 2025
35
:
2617
-
2625
;
Published in Advance
November 14, 2025
,
doi:
10.1101/gr.280569.125
Abstract
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Editorial
:
RECOMB 2025 Special Issue
Sriram Sankararaman
and
Bonnie Berger
Genome Res.
December 2025
35
:
v
-
vi
;
doi:
10.1101/gr.281664.125
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Method
:
Secure discovery of genetic relatives across large-scale and distributed genomic data sets
Matthew M. Hong
,
David Froelicher
,
Ricky Magner
,
Victoria Popic
,
Bonnie Berger
,
and
Hyunghoon Cho
Genome Res.
September 2024
34
:
1312
-
1323
;
Published in Advance
August 7, 2024
,
doi:
10.1101/gr.279057.124
Abstract
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Editorial
:
Innovations in computational biology: RECOMB 2024 Special Issue
Jian Ma
and
Bonnie Berger
Genome Res.
September 2024
34
:
vii
-
viii
;
doi:
10.1101/gr.280036.124
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Method
:
Assessing transcriptomic reidentification risks using discriminative sequence models
Shuvom Sadhuka
,
Daniel Fridman
,
Bonnie Berger
,
and
Hyunghoon Cho
Genome Res.
July 2023
33
:
1101
-
1112
;
Published in Advance
August 4, 2023
,
doi:
10.1101/gr.277699.123
Abstract
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Method
:
Efficient mapping of accurate long reads in minimizer space with mapquik
Bariş Ekim
,
Kristoffer Sahlin
,
Paul Medvedev
,
Bonnie Berger
,
and
Rayan Chikhi
Genome Res.
July 2023
33
:
1188
-
1197
;
Published in Advance
June 30, 2023
,
doi:
10.1101/gr.277679.123
Abstract
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Method
:
Efficient minimizer orders for large values of
k
using minimum decycling sets
David Pellow
,
Lianrong Pu
,
Bariş Ekim
,
Lior Kotlar
,
Bonnie Berger
,
Ron Shamir
,
and
Yaron Orenstein
Genome Res.
July 2023
33
:
1154
-
1161
;
Published in Advance
August 9, 2023
,
doi:
10.1101/gr.277644.123
Abstract
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Method
:
Structure-based whole-genome realignment reveals many novel noncoding RNAs
Sebastian Will
,
Michael Yu
,
and
Bonnie Berger
Genome Res.
June 2013
23
:
1018
-
1027
;
Published in Advance
January 7, 2013
,
doi:
10.1101/gr.137091.111
Abstract
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Research
:
Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs
Michael Schnall-Levin
,
Olivia S. Rissland
,
Wendy K. Johnston
,
Norbert Perrimon
,
David P. Bartel
,
and
Bonnie Berger
Genome Res.
September 2011
21
:
1395
-
1403
;
Published in Advance
June 17, 2011
,
doi:
10.1101/gr.121210.111
Abstract
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Methods
:
Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen
Oaz Nir
,
Chris Bakal
,
Norbert Perrimon
,
and
Bonnie Berger
Genome Res.
March 2010
20
:
372
-
380
;
Published in Advance
February 9, 2010
,
doi:
10.1101/gr.100248.109
Abstract
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