Searching journal content for Bing Ren in author.

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  1. Resource: Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
    • Kangli Wang,
    • Weikun Xia,
    • Yingli Gu,
    • Songpeng Zu,
    • Qian Yang,
    • Maria Luisa Amaral,
    • Yaozhi Wang,
    • Allen Wang,
    • Xiang-Dong Fu,
    • William C. Mobley,
    • and Bing Ren
    Genome Res. March 4, 2026 gr.281113.125; Published in Advance March 4, 2026, doi:10.1101/gr.281113.125
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  2. Research: KDM1A maintains genome-wide homeostasis of transcriptional enhancers
    • Saurabh Agarwal,
    • Katherine M. Bonefas,
    • Patricia M. Garay,
    • Emily Brookes,
    • Yumie Murata-Nakamura,
    • Robert S. Porter,
    • Todd S. Macfarlan,
    • Bing Ren,
    • and Shigeki Iwase
    Genome Res. February 2021 31: 186-197; Published in Advance January 7, 2021, doi:10.1101/gr.234559.118
  3. Method: A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
    • Yarui Diao,
    • Bin Li,
    • Zhipeng Meng,
    • Inkyung Jung,
    • Ah Young Lee,
    • Jesse Dixon,
    • Lenka Maliskova,
    • Kun-liang Guan,
    • Yin Shen,
    • and Bing Ren
    Genome Res. March 2016 26: 397-405; Published in Advance January 26, 2016, doi:10.1101/gr.197152.115
  4. Research: Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis
    • Catia Attanasio,
    • Alex S. Nord,
    • Yiwen Zhu,
    • Matthew J. Blow,
    • Simon C. Biddie,
    • Eric M. Mendenhall,
    • Jesse Dixon,
    • Crystal Wright,
    • Roya Hosseini,
    • Jennifer A. Akiyama,
    • Amy Holt,
    • Ingrid Plajzer-Frick,
    • Malak Shoukry,
    • Veena Afzal,
    • Bing Ren,
    • Bradley E. Bernstein,
    • Edward M. Rubin,
    • Axel Visel,
    • and Len A. Pennacchio
    Genome Res. June 2014 24: 920-929; Published in Advance April 21, 2014, doi:10.1101/gr.168930.113
  5. Research: Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells
    • Timothy J. Looney,
    • Li Zhang,
    • Chih-Hsin Chen,
    • Jae Hyun Lee,
    • Sheila Chari,
    • Frank Fuxiang Mao,
    • Mattia Pelizzola,
    • Lu Zhang,
    • Ryan Lister,
    • Samuel W. Baker,
    • Croydon J. Fernandes,
    • Jedidiah Gaetz,
    • Kara M. Foshay,
    • Kayla L. Clift,
    • Zhenyu Zhang,
    • Wei-Qiang Li,
    • Eric J. Vallender,
    • Ulrich Wagner,
    • Jane Yuxia Qin,
    • Katelyn J. Michelini,
    • Branimir Bugarija,
    • Donghyun Park,
    • Emmanuel Aryee,
    • Thomas Stricker,
    • Jie Zhou,
    • Kevin P. White,
    • Bing Ren,
    • Gary P. Schroth,
    • Joseph R. Ecker,
    • Andy Peng Xiang,
    • and Bruce T. Lahn
    Genome Res. February 2014 24: 267-280; Published in Advance December 5, 2013, doi:10.1101/gr.143891.112
  6. Research: CBX3 regulates efficient RNA processing genome-wide
    • Andrea Smallwood,
    • Gary C. Hon,
    • Fulai Jin,
    • Ryan E. Henry,
    • Joaquín M. Espinosa,
    • and Bing Ren
    Genome Res. August 2012 22: 1426-1436; Published in Advance June 8, 2012, doi:10.1101/gr.124818.111
  7. Research: Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    • Gary C. Hon,
    • R. David Hawkins,
    • Otavia L. Caballero,
    • Christine Lo,
    • Ryan Lister,
    • Mattia Pelizzola,
    • Armand Valsesia,
    • Zhen Ye,
    • Samantha Kuan,
    • Lee E. Edsall,
    • Anamaria Aranha Camargo,
    • Brian J. Stevenson,
    • Joseph R. Ecker,
    • Vineet Bafna,
    • Robert L. Strausberg,
    • Andrew J. Simpson,
    • and Bing Ren
    Genome Res. February 2012 22: 246-258; Published in Advance December 7, 2011, doi:10.1101/gr.125872.111
  8. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  9. LETTER: Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
    • Leah O. Barrera,
    • Zirong Li,
    • Andrew D. Smith,
    • Karen C. Arden,
    • Webster K. Cavenee,
    • Michael Q. Zhang,
    • Roland D. Green,
    • and Bing Ren
    Genome Res. January 2008 18: 46-59; Published in Advance November 27, 2007, doi:10.1101/gr.6654808
  10. Methods: Direct isolation and identification of promoters in the human genome
    • Tae Hoon Kim,
    • Leah O. Barrera,
    • Chunxu Qu,
    • Sara Van Calcar,
    • Nathan D. Trinklein,
    • Sara J. Cooper,
    • Rosa M. Luna,
    • Christopher K. Glass,
    • Michael G. Rosenfeld,
    • Richard M. Myers,
    • and Bing Ren
    Genome Res. June 2005 15: 830-839; Published in Advance May 17, 2005, doi:10.1101/gr.3430605
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