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Resource: Structural and operational complexity of the Geobacter sulfurreducens genome

Yu Qiu,
Byung-Kwan Cho,
Young Seoub Park,
Derek Lovley,
Bernhard Ø. Palsson,
and Karsten Zengler

Genome Res. September 2010 20: 1304-1311; Published in Advance June 30, 2010, doi:10.1101/gr.107540.110

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LETTER: Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

Byung-Kwan Cho,
Eric M. Knight,
Christian L. Barrett,
and Bernhard Ø. Palsson

Genome Res. June 2008 18: 900-910; Published in Advance March 13, 2008, doi:10.1101/gr.070276.107

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LETTER: Systematic condition-dependent annotation of metabolic genes

Tomer Shlomi,
Markus Herrgard,
Vasiliy Portnoy,
Efrat Naim,
Bernhard Ø. Palsson,
Roded Sharan,
and Eytan Ruppin

Genome Res. November 2007 17: 1626-1633; Published in Advance September 25, 2007, doi:10.1101/gr.6678707

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LETTER: Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

Markus J. Herrgård,
Baek-Seok Lee,
Vasiliy Portnoy,
and Bernhard Ø. Palsson

Genome Res. May 2006 16: 627-635; Published in Advance April 10, 2006, doi:10.1101/gr.4083206

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LETTER: Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

Stephen S. Fong,
Andrew R. Joyce,
and Bernhard Ø. Palsson

Genome Res. October 2005 15: 1365-1372; doi:10.1101/gr.3832305

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Methods: High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

Christiane Honisch,
Anu Raghunathan,
Charles R. Cantor,
Bernhard Ø. Palsson,
and Dirk van den Boom

Genome Res. December 2004 14: 2495-2502; doi:10.1101/gr.2977704

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Methods: Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States

Jennifer L. Reed and
Bernhard Ø. Palsson

Genome Res. September 2004 14: 1797-1805; doi:10.1101/gr.2546004

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LETTER: Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

Natalie C. Duarte,
Markus J. Herrgård,
and Bernhard Ø. Palsson

Genome Res. July 2004 14: 1298-1309; Published in Advance June 14, 2004, doi:10.1101/gr.2250904

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LETTER: Reconciling Gene Expression Data With Known Genome-Scale Regulatory Network Structures

Markus J. Herrgård,
Markus W. Covert,
and Bernhard ø. Palsson

Genome Res. November 2003 13: 2423-2434; Published in Advance January 1, 2003, doi:10.1101/gr.1330003

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LETTER: Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network

Jochen Förster,
Iman Famili,
Patrick Fu,
Bernhard Ø. Palsson,
and Jens Nielsen

Genome Res. February 1, 2003 13: 244-253; doi:10.1101/gr.234503

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