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Benjamin J. Blencowe
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An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
Javier Tapial
,
Kevin C.H. Ha
,
Timothy Sterne-Weiler
,
André Gohr
,
Ulrich Braunschweig
,
Antonio Hermoso-Pulido
,
Mathieu Quesnel-Vallières
,
Jon Permanyer
,
Reza Sodaei
,
Yamile Marquez
,
Luca Cozzuto
,
Xinchen Wang
,
Melisa Gómez-Velázquez
,
Teresa Rayon
,
Miguel Manzanares
,
Julia Ponomarenko
,
Benjamin J. Blencowe
,
and
Manuel Irimia
Genome Res.
October 2017
27
:
1759
-
1768
;
Published in Advance
August 30, 2017
,
doi:
10.1101/gr.220962.117
Abstract
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:
Widespread intron retention in mammals functionally tunes transcriptomes
Ulrich Braunschweig
,
Nuno L. Barbosa-Morais
,
Qun Pan
,
Emil N. Nachman
,
Babak Alipanahi
,
Thomas Gonatopoulos-Pournatzis
,
Brendan Frey
,
Manuel Irimia
,
and
Benjamin J. Blencowe
Genome Res.
November 2014
24
:
1774
-
1786
;
Published in Advance
September 25, 2014
,
doi:
10.1101/gr.177790.114
Abstract
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:
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
Joanna Y. Ip
,
Dominic Schmidt
,
Qun Pan
,
Arun K. Ramani
,
Andrew G. Fraser
,
Duncan T. Odom
,
and
Benjamin J. Blencowe
Genome Res.
March 2011
21
:
390
-
401
;
Published in Advance
December 16, 2010
,
doi:
10.1101/gr.111070.110
Abstract
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:
Genome-wide analysis of alternative splicing in
Caenorhabditis elegans
Arun K. Ramani
,
John A. Calarco
,
Qun Pan
,
Sepand Mavandadi
,
Ying Wang
,
Andrew C. Nelson
,
Leo J. Lee
,
Quaid Morris
,
Benjamin J. Blencowe
,
Mei Zhen
,
and
Andrew G. Fraser
Genome Res.
February 2011
21
:
342
-
348
;
Published in Advance
December 22, 2010
,
doi:
10.1101/gr.114645.110
Abstract
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A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation
Isabel Aznarez
,
Yoseph Barash
,
Ofer Shai
,
David He
,
Julian Zielenski
,
Lap-Chee Tsui
,
John Parkinson
,
Brendan J. Frey
,
Johanna M. Rommens
,
and
Benjamin J. Blencowe
Genome Res.
August 2008
18
:
1247
-
1258
;
Published in Advance
May 2, 2008
,
doi:
10.1101/gr.073155.107
Abstract
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