Searching journal content for Ben Langmead in author.

Displaying results 1-9 of 9
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  1. Method: Minimizing reference bias with an imputed personalized reference
    • Kavya Vaddadi,
    • Mao-Jan Lin,
    • Sina Majidian,
    • Taher Mun,
    • and Ben Langmead
    Genome Res. March 5, 2026 gr.280989.125; Published in Advance March 5, 2026, doi:10.1101/gr.280989.125
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  2. Method: Partitioned multi-MUM finding for scalable pangenomics with MumemtoM
    • Vikram S. Shivakumar and
    • Ben Langmead
    Genome Res. February 2026 36: 397-404; Published in Advance November 7, 2025, doi:10.1101/gr.280940.125
  3. Method: Robust 16S rRNA classification based on a compressed LCA index
    • Omar Ahmed,
    • Christina Boucher,
    • and Ben Langmead
    Genome Res. December 2025 35: 2650-2660; Published in Advance August 25, 2025, doi:10.1101/gr.279846.124
  4. Method: Accurate short-read alignment through r-index-based pangenome indexing
    • Rahul Varki,
    • Massimiliano Rossi,
    • Eddie Ferro,
    • Marco Oliva,
    • Erik Garrison,
    • Ben Langmead,
    • and Christina Boucher
    Genome Res. July 2025 35: 1609-1620; Published in Advance June 12, 2025, doi:10.1101/gr.279858.124
    OPEN ACCESS ARTICLE
  5. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  6. Method: Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2
    • Daniel N. Baker and
    • Ben Langmead
    Genome Res. July 2023 33: 1218-1227; Published in Advance July 6, 2023, doi:10.1101/gr.277655.123
    OPEN ACCESS ARTICLE
  7. Method: Efficient taxa identification using a pangenome index
    • Omar Ahmed,
    • Massimiliano Rossi,
    • Christina Boucher,
    • and Ben Langmead
    Genome Res. July 2023 33: 1069-1077; Published in Advance May 31, 2023, doi:10.1101/gr.277642.123
    OPEN ACCESS ARTICLE
  8. Resource: Recounting the FANTOM CAGE-Associated Transcriptome
    • Eddie Luidy Imada,
    • Diego Fernando Sanchez,
    • Leonardo Collado-Torres,
    • Christopher Wilks,
    • Tejasvi Matam,
    • Wikum Dinalankara,
    • Aleksey Stupnikov,
    • Francisco Lobo-Pereira,
    • Chi-Wai Yip,
    • Kayoko Yasuzawa,
    • Naoto Kondo,
    • Masayoshi Itoh,
    • Harukazu Suzuki,
    • Takeya Kasukawa,
    • Chung-Chau Hon,
    • Michiel J.L. de Hoon,
    • Jay W. Shin,
    • Piero Carninci,
    • Andrew E. Jaffe,
    • Jeffrey T. Leek,
    • Alexander Favorov,
    • Gloria R. Franco,
    • Ben Langmead,
    • and Luigi Marchionni
    Genome Res. July 2020 30: 1073-1081; Published in Advance February 20, 2020, doi:10.1101/gr.254656.119
    OPEN ACCESS ARTICLE
  9. Research: Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
    • Kasper D. Hansen,
    • Sarven Sabunciyan,
    • Ben Langmead,
    • Noemi Nagy,
    • Rebecca Curley,
    • Georg Klein,
    • Eva Klein,
    • Daniel Salamon,
    • and Andrew P. Feinberg
    Genome Res. February 2014 24: 177-184; Published in Advance September 25, 2013, doi:10.1101/gr.157743.113
    OPEN ACCESS ARTICLE
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