Searching journal content for B. Franklin Pugh in author.

Displaying results 1-10 of 10
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  1. Research: Genome-wide promoter assembly in E. coli measured at single-base resolution
    • Jordan John,
    • Javaid Jabbar,
    • Nitika Badjatia,
    • Matthew J. Rossi,
    • William K.M. Lai,
    • and B. Franklin Pugh
    Genome Res. May 2022 32: 878-892; Published in Advance April 28, 2022, doi:10.1101/gr.276544.121
  2. Resource: A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells
    • William K.M. Lai,
    • Luca Mariani,
    • Gerson Rothschild,
    • Edwin R. Smith,
    • Bryan J. Venters,
    • Thomas R. Blanda,
    • Prashant K. Kuntala,
    • Kylie Bocklund,
    • Joshua Mairose,
    • Sarah N. Dweikat,
    • Katelyn Mistretta,
    • Matthew J. Rossi,
    • Daniela James,
    • James T. Anderson,
    • Sabrina K. Phanor,
    • Wanwei Zhang,
    • Zibo Zhao,
    • Avani P. Shah,
    • Katherine Novitzky,
    • Eileen McAnarney,
    • Michael-C. Keogh,
    • Ali Shilatifard,
    • Uttiya Basu,
    • Martha L. Bulyk,
    • and B. Franklin Pugh
    Genome Res. September 2021 31: 1663-1679; Published in Advance August 23, 2021, doi:10.1101/gr.275472.121
  3. Research: Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
    • Matthew J. Rossi,
    • William K.M. Lai,
    • and B. Franklin Pugh
    Genome Res. April 2018 28: 497-508; Published in Advance March 21, 2018, doi:10.1101/gr.229518.117
    OPEN ACCESS ARTICLE
  4. Research: Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock
    • Vinesh Vinayachandran,
    • Rohit Reja,
    • Matthew J. Rossi,
    • Bongsoo Park,
    • Lila Rieber,
    • Chitvan Mittal,
    • Shaun Mahony,
    • and B. Franklin Pugh
    Genome Res. March 2018 28: 357-366; Published in Advance February 14, 2018, doi:10.1101/gr.226761.117
  5. Research: Genome-wide uniformity of human ‘open’ pre-initiation complexes
    • William K.M. Lai and
    • B. Franklin Pugh
    Genome Res. January 2017 27: 15-26; Published in Advance November 10, 2016, doi:10.1101/gr.210955.116
    OPEN ACCESS ARTICLE
  6. Research: Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium
    • Gue Su Chang,
    • Angelika A. Noegel,
    • Travis N. Mavrich,
    • Rolf Müller,
    • Lynn Tomsho,
    • Elissa Ward,
    • Marius Felder,
    • Cizhong Jiang,
    • Ludwig Eichinger,
    • Gernot Glöckner,
    • Stephan C. Schuster,
    • and B. Franklin Pugh
    Genome Res. June 2012 22: 1098-1106; Published in Advance March 20, 2012, doi:10.1101/gr.131649.111
  7. Research: Variety of genomic DNA patterns for nucleosome positioning
    • Ilya Ioshikhes,
    • Sergey Hosid,
    • and B. Franklin Pugh
    Genome Res. November 2011 21: 1863-1871; Published in Advance July 12, 2011, doi:10.1101/gr.116228.110
  8. Research: Stable and dynamic nucleosome states during a meiotic developmental process
    • Liye Zhang,
    • Hong Ma,
    • and B. Franklin Pugh
    Genome Res. June 2011 21: 875-884; Published in Advance April 22, 2011, doi:10.1101/gr.117465.110
  9. Article: A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    • Bryan J. Venters and
    • B. Franklin Pugh
    Genome Res. March 2009 19: 360-371; Published in Advance January 5, 2009, doi:10.1101/gr.084970.108
  10. LETTER: A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    • Travis N. Mavrich,
    • Ilya P. Ioshikhes,
    • Bryan J. Venters,
    • Cizhong Jiang,
    • Lynn P. Tomsho,
    • Ji Qi,
    • Stephan C. Schuster,
    • Istvan Albert,
    • and B. Franklin Pugh
    Genome Res. July 2008 18: 1073-1083; Published in Advance June 12, 2008, doi:10.1101/gr.078261.108
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