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Athma A. Pai
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Perspective
:
Challenges in identifying mRNA transcript starts and ends from long-read sequencing data
Ezequiel Calvo-Roitberg
,
Rachel F. Daniels
,
and
Athma A. Pai
Genome Res.
November 2024
34
:
1719
-
1734
;
doi:
10.1101/gr.279559.124
Abstract
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Research
:
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
Alain Pacis
,
Ludovic Tailleux
,
Alexander M. Morin
,
John Lambourne
,
Julia L. MacIsaac
,
Vania Yotova
,
Anne Dumaine
,
Anne Danckaert
,
Francesca Luca
,
Jean-Christophe Grenier
,
Kasper D. Hansen
,
Brigitte Gicquel
,
Miao Yu
,
Athma Pai
,
Chuan He
,
Jenny Tung
,
Tomi Pastinen
,
Michael S. Kobor
,
Roger Pique-Regi
,
Yoav Gilad
,
and
Luis B. Barreiro
Genome Res.
December 2015
25
:
1801
-
1811
;
Published in Advance
September 21, 2015
,
doi:
10.1101/gr.192005.115
Abstract
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Method
:
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi
,
Jacob F. Degner
,
Athma A. Pai
,
Daniel J. Gaffney
,
Yoav Gilad
,
and
Jonathan K. Pritchard
Genome Res.
March 2011
21
:
447
-
455
;
Published in Advance
November 24, 2010
,
doi:
10.1101/gr.112623.110
Abstract
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Single-cell gene signature scoring
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