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Arend Sidow
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.
Displaying results 1-10 of
20
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Method
:
Read clouds uncover variation in complex regions of the human genome
Alex Bishara
,
Yuling Liu
,
Ziming Weng
,
Dorna Kashef-Haghighi
,
Daniel E. Newburger
,
Robert West
,
Arend Sidow
,
and
Serafim Batzoglou
Genome Res.
October 2015
25
:
1570
-
1580
;
Published in Advance
August 18, 2015
,
doi:
10.1101/gr.191189.115
Abstract
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Method
:
Discovery of recurrent structural variants in nasopharyngeal carcinoma
Anton Valouev
,
Ziming Weng
,
Robert T. Sweeney
,
Sushama Varma
,
Quynh-Thu Le
,
Christina Kong
,
Arend Sidow
,
and
Robert B. West
Genome Res.
February 2014
24
:
300
-
309
;
Published in Advance
November 8, 2013
,
doi:
10.1101/gr.156224.113
Abstract
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Research
:
Genome evolution during progression to breast cancer
Daniel E. Newburger
,
Dorna Kashef-Haghighi
,
Ziming Weng
,
Raheleh Salari
,
Robert T. Sweeney
,
Alayne L. Brunner
,
Shirley X. Zhu
,
Xiangqian Guo
,
Sushama Varma
,
Megan L. Troxell
,
Robert B. West
,
Serafim Batzoglou
,
and
Arend Sidow
Genome Res.
July 2013
23
:
1097
-
1108
;
Published in Advance
April 8, 2013
,
doi:
10.1101/gr.151670.112
Abstract
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Research
:
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
Stephen B. Montgomery
,
David L. Goode
,
Erika Kvikstad
,
Cornelis A. Albers
,
Zhengdong D. Zhang
,
Xinmeng Jasmine Mu
,
Guruprasad Ananda
,
Bryan Howie
,
Konrad J. Karczewski
,
Kevin S. Smith
,
Vanessa Anaya
,
Rhea Richardson
,
Joe Davis
,
The 1000 Genomes Project Consortium
,
Daniel G. MacArthur
,
Arend Sidow
,
Laurent Duret
,
Mark Gerstein
,
Kateryna D. Makova
,
Jonathan Marchini
,
Gil McVean
,
and
Gerton Lunter
Genome Res.
May 2013
23
:
749
-
761
;
Published in Advance
March 11, 2013
,
doi:
10.1101/gr.148718.112
Abstract
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Method
:
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
Anshul Kundaje
,
Sofia Kyriazopoulou-Panagiotopoulou
,
Max Libbrecht
,
Cheryl L. Smith
,
Debasish Raha
,
Elliott E. Winters
,
Steven M. Johnson
,
Michael Snyder
,
Serafim Batzoglou
,
and
Arend Sidow
Genome Res.
September 2012
22
:
1735
-
1747
;
doi:
10.1101/gr.136366.111
Abstract
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Resource
:
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt
,
Georgi K. Marinov
,
Anshul Kundaje
,
Pouya Kheradpour
,
Florencia Pauli
,
Serafim Batzoglou
,
Bradley E. Bernstein
,
Peter Bickel
,
James B. Brown
,
Philip Cayting
,
Yiwen Chen
,
Gilberto DeSalvo
,
Charles Epstein
,
Katherine I. Fisher-Aylor
,
Ghia Euskirchen
,
Mark Gerstein
,
Jason Gertz
,
Alexander J. Hartemink
,
Michael M. Hoffman
,
Vishwanath R. Iyer
,
Youngsook L. Jung
,
Subhradip Karmakar
,
Manolis Kellis
,
Peter V. Kharchenko
,
Qunhua Li
,
Tao Liu
,
X. Shirley Liu
,
Lijia Ma
,
Aleksandar Milosavljevic
,
Richard M. Myers
,
Peter J. Park
,
Michael J. Pazin
,
Marc D. Perry
,
Debasish Raha
,
Timothy E. Reddy
,
Joel Rozowsky
,
Noam Shoresh
,
Arend Sidow
,
Matthew Slattery
,
John A. Stamatoyannopoulos
,
Michael Y. Tolstorukov
,
Kevin P. White
,
Simon Xi
,
Peggy J. Farnham
,
Jason D. Lieb
,
Barbara J. Wold
,
and
Michael Snyder
Genome Res.
September 2012
22
:
1813
-
1831
;
doi:
10.1101/gr.136184.111
Abstract
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Letter
:
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
David L. Goode
,
Gregory M. Cooper
,
Jeremy Schmutz
,
Mark Dickson
,
Eidelyn Gonzales
,
Ming Tsai
,
Kalpana Karra
,
Eugene Davydov
,
Serafim Batzoglou
,
Richard M. Myers
,
and
Arend Sidow
Genome Res.
March 2010
20
:
301
-
310
;
Published in Advance
January 12, 2010
,
doi:
10.1101/gr.102210.109
Abstract
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Resource
:
ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
Jonathan Binkley
,
Kalpana Karra
,
Andrew Kirby
,
Midori Hosobuchi
,
Eric A. Stone
,
and
Arend Sidow
Genome Res.
January 2010
20
:
142
-
154
;
Published in Advance
October 21, 2009
,
doi:
10.1101/gr.097121.109
Abstract
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RESOURCE
:
The
C. savignyi
genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution
Matthew M. Hill
,
Karl W. Broman
,
Elia Stupka
,
William C. Smith
,
Di Jiang
,
and
Arend Sidow
Genome Res.
August 2008
18
:
1369
-
1379
;
Published in Advance
June 2, 2008
,
doi:
10.1101/gr.078576.108
Abstract
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LETTER
:
A high-resolution, nucleosome position map of
C. elegans
reveals a lack of universal sequence-dictated positioning
Anton Valouev
,
Jeffrey Ichikawa
,
Thaisan Tonthat
,
Jeremy Stuart
,
Swati Ranade
,
Heather Peckham
,
Kathy Zeng
,
Joel A. Malek
,
Gina Costa
,
Kevin McKernan
,
Arend Sidow
,
Andrew Fire
,
and
Steven M. Johnson
Genome Res.
July 2008
18
:
1051
-
1063
;
Published in Advance
May 13, 2008
,
doi:
10.1101/gr.076463.108
Abstract
Full Text
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