Searching journal content for Anton Nekrutenko in author.

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  1. Resource: The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
    • Simon Bray,
    • John Chilton,
    • Matthias Bernt,
    • Nicola Soranzo,
    • Marius van den Beek,
    • Bérénice Batut,
    • Helena Rasche,
    • Martin Čech,
    • Peter J.A. Cock,
    • Björn Grüning,
    • and Anton Nekrutenko
    Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
    OPEN ACCESS ARTICLE
  2. Research: RNA–DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA
    • Dan Bar-Yaacov,
    • Gal Avital,
    • Liron Levin,
    • Allison L. Richards,
    • Naomi Hachen,
    • Boris Rebolledo Jaramillo,
    • Anton Nekrutenko,
    • Raz Zarivach,
    • and Dan Mishmar
    Genome Res. November 2013 23: 1789-1796; Published in Advance August 2, 2013, doi:10.1101/gr.161265.113
  3. Resource: Windshield splatter analysis with the Galaxy metagenomic pipeline
    • Sergei Kosakovsky Pond,
    • Samir Wadhawan,
    • Francesca Chiaromonte,
    • Guruprasad Ananda,
    • Wen-Yu Chung,
    • James Taylor,
    • Anton Nekrutenko,
    • and The Galaxy Team
    Genome Res. November 2009 19: 2144-2153; Published in Advance October 9, 2009, doi:10.1101/gr.094508.109
    OPEN ACCESS ARTICLE
  4. RESOURCE: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107
  5. RESOURCE: A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
    • Daniel Blankenberg,
    • James Taylor,
    • Ian Schenck,
    • Jianbin He,
    • Yi Zhang,
    • Matthew Ghent,
    • Narayanan Veeraraghavan,
    • Istvan Albert,
    • Webb Miller,
    • Kateryna D. Makova,
    • Ross C. Hardison,
    • and Anton Nekrutenko
    Genome Res. June 2007 17: 960-964; doi:10.1101/gr.5578007
    OPEN ACCESS ARTICLE
  6. RESOURCE: Galaxy: A platform for interactive large-scale genome analysis
    • Belinda Giardine,
    • Cathy Riemer,
    • Ross C. Hardison,
    • Richard Burhans,
    • Laura Elnitski,
    • Prachi Shah,
    • Yi Zhang,
    • Daniel Blankenberg,
    • Istvan Albert,
    • James Taylor,
    • Webb Miller,
    • W. James Kent,
    • and Anton Nekrutenko
    Genome Res. October 2005 15: 1451-1455; Published in Advance September 16, 2005, doi:10.1101/gr.4086505
  7. LETTER: Signatures of Domain Shuffling in the Human Genome
    • Henrik Kaessmann,
    • Sebastian Zöllner,
    • Anton Nekrutenko,
    • and Wen-Hsiung Li
    Genome Res. November 1, 2002 12: 1642-1650; doi:10.1101/gr.520702
  8. METHODS: The K A/K S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study
    • Anton Nekrutenko,
    • Kateryna D. Makova,
    • and Wen-Hsiung Li
    Genome Res. January 1, 2002 12: 198-202; Published in Advance December 14, 2001, doi:10.1101/gr.200901
  9. LETTER: Assessment of Compositional Heterogeneity Within and Between Eukaryotic Genomes
    • Anton Nekrutenko and
    • Wen-Hsiung Li
    Genome Res. December 1, 2000 10: 1986-1995; doi:10.1101/gr.153400
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