Searching journal content for Anshul Kundaje in author.

Displaying results 1-10 of 15
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  1. Research: The chromatin landscape of the histone-possessing Bacteriovorax bacteria
    • Georgi K. Marinov,
    • Benjamin Doughty,
    • Anshul Kundaje,
    • and William J. Greenleaf
    Genome Res. January 2025 35: 109-123; Published in Advance November 21, 2024, doi:10.1101/gr.279418.124
  2. Method: Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
    • Kelly Cochran,
    • Divyanshi Srivastava,
    • Avanti Shrikumar,
    • Akshay Balsubramani,
    • Ross C. Hardison,
    • Anshul Kundaje,
    • and Shaun Mahony
    Genome Res. March 2022 32: 512-523; Published in Advance January 18, 2022, doi:10.1101/gr.275394.121
  3. Resource: Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses
    • Bérénice A. Benayoun,
    • Elizabeth A. Pollina,
    • Param Priya Singh,
    • Salah Mahmoudi,
    • Itamar Harel,
    • Kerriann M. Casey,
    • Ben W. Dulken,
    • Anshul Kundaje,
    • and Anne Brunet
    Genome Res. April 2019 29: 697-709; Published in Advance March 11, 2019, doi:10.1101/gr.240093.118
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
    • Amit Blumberg,
    • Edward J. Rice,
    • Anshul Kundaje,
    • Charles G. Danko,
    • and Dan Mishmar
    Genome Res. April 2019 29: 710.1; doi:10.1101/gr.248971.119
    OPEN ACCESS ARTICLE
  5. Research: A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization
    • Amit Blumberg,
    • Charles G. Danko,
    • Anshul Kundaje,
    • and Dan Mishmar
    Genome Res. August 2018 28: 1158-1168; Published in Advance July 12, 2018, doi:10.1101/gr.230409.117
  6. Resource: Impact of regulatory variation across human iPSCs and differentiated cells
    • Nicholas E. Banovich,
    • Yang I. Li,
    • Anil Raj,
    • Michelle C. Ward,
    • Peyton Greenside,
    • Diego Calderon,
    • Po Yuan Tung,
    • Jonathan E. Burnett,
    • Marsha Myrthil,
    • Samantha M. Thomas,
    • Courtney K. Burrows,
    • Irene Gallego Romero,
    • Bryan J. Pavlovic,
    • Anshul Kundaje,
    • Jonathan K. Pritchard,
    • and Yoav Gilad
    Genome Res. January 2018 28: 122-131; Published in Advance December 5, 2017, doi:10.1101/gr.224436.117
    OPEN ACCESS ARTICLE
  7. Resource: Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans
    • Aaron C. Daugherty,
    • Robin W. Yeo,
    • Jason D. Buenrostro,
    • William J. Greenleaf,
    • Anshul Kundaje,
    • and Anne Brunet
    Genome Res. December 2017 27: 2096-2107; Published in Advance November 15, 2017, doi:10.1101/gr.226233.117
    OPEN ACCESS ARTICLE
  8. Research: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
    • Amit Blumberg,
    • Edward J. Rice,
    • Anshul Kundaje,
    • Charles G. Danko,
    • and Dan Mishmar
    Genome Res. March 2017 27: 362-373; Published in Advance January 3, 2017, doi:10.1101/gr.209924.116
  9. Research: Impact of the X Chromosome and sex on regulatory variation
    • Kimberly R. Kukurba,
    • Princy Parsana,
    • Brunilda Balliu,
    • Kevin S. Smith,
    • Zachary Zappala,
    • David A. Knowles,
    • Marie-Julie Favé,
    • Joe R. Davis,
    • Xin Li,
    • Xiaowei Zhu,
    • James B. Potash,
    • Myrna M. Weissman,
    • Jianxin Shi,
    • Anshul Kundaje,
    • Douglas F. Levinson,
    • Philip Awadalla,
    • Sara Mostafavi,
    • Alexis Battle,
    • and Stephen B. Montgomery
    Genome Res. June 2016 26: 768-777; Published in Advance April 21, 2016, doi:10.1101/gr.197897.115
    OPEN ACCESS ARTICLE
  10. Resource: Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster
    • Matthew Slattery,
    • Lijia Ma,
    • Rebecca F. Spokony,
    • Robert K. Arthur,
    • Pouya Kheradpour,
    • Anshul Kundaje,
    • Nicolas Nègre,
    • Alex Crofts,
    • Ryan Ptashkin,
    • Jennifer Zieba,
    • Alexander Ostapenko,
    • Sarah Suchy,
    • Alec Victorsen,
    • Nader Jameel,
    • A. Jason Grundstad,
    • Wenxuan Gao,
    • Jennifer R. Moran,
    • E. Jay Rehm,
    • Robert L. Grossman,
    • Manolis Kellis,
    • and Kevin P. White
    Genome Res. July 2014 24: 1224-1235; Published in Advance July 1, 2014, doi:10.1101/gr.168807.113
    OPEN ACCESS ARTICLE
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