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Andrew B. Stergachis
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Displaying results 1-5 of
5
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Method
:
Resolving the chromatin impact of mosaic variants with targeted Fiber-seq
Stephanie C. Bohaczuk
,
Zachary J. Amador
,
Chang Li
,
Benjamin J. Mallory
,
Elliott G. Swanson
,
Jane Ranchalis
,
Mitchell R. Vollger
,
Katherine M. Munson
,
Tom Walsh
,
Morgan O. Hamm
,
Yizi Mao
,
Andre Lieber
,
and
Andrew B. Stergachis
Genome Res.
December 2024
34
:
2269
-
2278
;
Published in Advance
December 9, 2024
,
doi:
10.1101/gr.279747.124
Abstract
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Method
:
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with
fibertools
Anupama Jha
,
Stephanie C. Bohaczuk
,
Yizi Mao
,
Jane Ranchalis
,
Benjamin J. Mallory
,
Alan T. Min
,
Morgan O. Hamm
,
Elliott Swanson
,
Danilo Dubocanin
,
Connor Finkbeiner
,
Tony Li
,
Dale Whittington
,
William Stafford Noble
,
Andrew B. Stergachis
,
and
Mitchell R. Vollger
Genome Res.
November 2024
34
:
1976
-
1986
;
Published in Advance
June 7, 2024
,
doi:
10.1101/gr.279095.124
Abstract
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Method
:
Evaluation of
N
6
-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes
Brian M. Debo
,
Benjamin J. Mallory
,
and
Andrew B. Stergachis
Genome Res.
March 2023
33
:
427
-
434
;
Published in Advance
February 14, 2023
,
doi:
10.1101/gr.276696.122
Abstract
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Research
:
Personal and population genomics of human regulatory variation
Benjamin Vernot
,
Andrew B. Stergachis
,
Matthew T. Maurano
,
Jeff Vierstra
,
Shane Neph
,
Robert E. Thurman
,
John A. Stamatoyannopoulos
,
and
Joshua M. Akey
Genome Res.
September 2012
22
:
1689
-
1697
;
doi:
10.1101/gr.134890.111
Abstract
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
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