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Alistair R.R. Forrest
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Displaying results 1-10 of
12
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Method
:
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
Michiel de Hoon
,
Alessandro Bonetti
,
Charles Plessy
,
Yoshinari Ando
,
Chung-Chau Hon
,
Yuri Ishizu
,
Masayoshi Itoh
,
Sachi Kato
,
Dongyan Lin
,
Sho Maekawa
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Jay W. Shin
,
Jens Stolte
,
Ana Maria Suzuki
,
Michihira Tagami
,
Hazuki Takahashi
,
Supat Thongjuea
,
Alistair R.R. Forrest
,
Yoshihide Hayashizaki
,
Juha Kere
,
and
Piero Carninci
Genome Res.
September 2022
32
:
1727
-
1735
;
Published in Advance
August 12, 2022
,
doi:
10.1101/gr.276647.122
Abstract
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Corrigendum
:
Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
Jordan A. Ramilowski
,
Chi Wai Yip
,
Saumya Agrawal
,
Jen-Chien Chang
,
Yari Ciani
,
Ivan V. Kulakovskiy
,
Mickaël Mendez
,
Jasmine Li Ching Ooi
,
John F. Ouyang
,
Nick Parkinson
,
Andreas Petri
,
Leonie Roos
,
Jessica Severin
,
Kayoko Yasuzawa
,
Imad Abugessaisa
,
Altuna Akalin
,
Ivan V. Antonov
,
Erik Arner
,
Alessandro Bonetti
,
Hidemasa Bono
,
Beatrice Borsari
,
Frank Brombacher
,
Christopher J.F. Cameron
,
Carlo Vittorio Cannistraci
,
Ryan Cardenas
,
Melissa Cardon
,
Howard Chang
,
Josée Dostie
,
Luca Ducoli
,
Alexander Favorov
,
Alexandre Fort
,
Diego Garrido
,
Noa Gil
,
Juliette Gimenez
,
Reto Guler
,
Lusy Handoko
,
Jayson Harshbarger
,
Akira Hasegawa
,
Yuki Hasegawa
,
Kosuke Hashimoto
,
Norihito Hayatsu
,
Peter Heutink
,
Tetsuro Hirose
,
Eddie L. Imada
,
Masayoshi Itoh
,
Bogumil Kaczkowski
,
Aditi Kanhere
,
Emily Kawabata
,
Hideya Kawaji
,
Tsugumi Kawashima
,
S. Thomas Kelly
,
Miki Kojima
,
Naoto Kondo
,
Haruhiko Koseki
,
Tsukasa Kouno
,
Anton Kratz
,
Mariola Kurowska-Stolarska
,
Andrew Tae Jun Kwon
,
Jeffrey Leek
,
Andreas Lennartsson
,
Marina Lizio
,
Fernando López-Redondo
,
Joachim Luginbühl
,
Shiori Maeda
,
Vsevolod J. Makeev
,
Luigi Marchionni
,
Yulia A. Medvedeva
,
Aki Minoda
,
Ferenc Müller
,
Manuel Muñoz-Aguirre
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Kazuhiro R. Nitta
,
Shuhei Noguchi
,
Yukihiko Noro
,
Ramil Nurtdinov
,
Yasushi Okazaki
,
Valerio Orlando
,
Denis Paquette
,
Callum J.C. Parr
,
Owen J.L. Rackham
,
Patrizia Rizzu
,
Diego Fernando Sánchez Martinez
,
Albin Sandelin
,
Pillay Sanjana
,
Colin A.M. Semple
,
Youtaro Shibayama
,
Divya M. Sivaraman
,
Takahiro Suzuki
,
Suzannah C. Szumowski
,
Michihira Tagami
,
Martin S. Taylor
,
Chikashi Terao
,
Malte Thodberg
,
Supat Thongjuea
,
Vidisha Tripathi
,
Igor Ulitsky
,
Roberto Verardo
,
Ilya E. Vorontsov
,
Chinatsu Yamamoto
,
Robert S. Young
,
J. Kenneth Baillie
,
Alistair R.R. Forrest
,
Roderic Guigó
,
Michael M. Hoffman
,
Chung Chau Hon
,
Takeya Kasukawa
,
Sakari Kauppinen
,
Juha Kere
,
Boris Lenhard
,
Claudio Schneider
,
Harukazu Suzuki
,
Ken Yagi
,
Michiel J.L. de Hoon
,
Jay W. Shin
,
and
Piero Carninci
Genome Res.
September 2020
30
:
1377-1
;
doi:
10.1101/gr.270330.120
Extract
Full Text
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Research
:
Comparative transcriptomics of primary cells in vertebrates
Tanvir Alam
,
Saumya Agrawal
,
Jessica Severin
,
Robert S. Young
,
Robin Andersson
,
Erik Arner
,
Akira Hasegawa
,
Marina Lizio
,
Jordan A. Ramilowski
,
Imad Abugessaisa
,
Yuri Ishizu
,
Shohei Noma
,
Hiroshi Tarui
,
Martin S. Taylor
,
Timo Lassmann
,
Masayoshi Itoh
,
Takeya Kasukawa
,
Hideya Kawaji
,
Luigi Marchionni
,
Guojun Sheng
,
Alistair R.R. Forrest
,
Levon M. Khachigian
,
Yoshihide Hayashizaki
,
Piero Carninci
,
and
Michiel J.L. de Hoon
Genome Res.
July 2020
30
:
951
-
961
;
Published in Advance
July 27, 2020
,
doi:
10.1101/gr.255679.119
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
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Resource
:
Functional annotation of human long noncoding RNAs via molecular phenotyping
Jordan A. Ramilowski
,
Chi Wai Yip
,
Saumya Agrawal
,
Jen-Chien Chang
,
Yari Ciani
,
Ivan V. Kulakovskiy
,
Mickaël Mendez
,
Jasmine Li Ching Ooi
,
John F. Ouyang
,
Nick Parkinson
,
Andreas Petri
,
Leonie Roos
,
Jessica Severin
,
Kayoko Yasuzawa
,
Imad Abugessaisa
,
Altuna Akalin
,
Ivan V. Antonov
,
Erik Arner
,
Alessandro Bonetti
,
Hidemasa Bono
,
Beatrice Borsari
,
Frank Brombacher
,
Christopher J.F. Cameron
,
Carlo Vittorio Cannistraci
,
Ryan Cardenas
,
Melissa Cardon
,
Howard Chang
,
Josée Dostie
,
Luca Ducoli
,
Alexander Favorov
,
Alexandre Fort
,
Diego Garrido
,
Noa Gil
,
Juliette Gimenez
,
Reto Guler
,
Lusy Handoko
,
Jayson Harshbarger
,
Akira Hasegawa
,
Yuki Hasegawa
,
Kosuke Hashimoto
,
Norihito Hayatsu
,
Peter Heutink
,
Tetsuro Hirose
,
Eddie L. Imada
,
Masayoshi Itoh
,
Bogumil Kaczkowski
,
Aditi Kanhere
,
Emily Kawabata
,
Hideya Kawaji
,
Tsugumi Kawashima
,
S. Thomas Kelly
,
Miki Kojima
,
Naoto Kondo
,
Haruhiko Koseki
,
Tsukasa Kouno
,
Anton Kratz
,
Mariola Kurowska-Stolarska
,
Andrew Tae Jun Kwon
,
Jeffrey Leek
,
Andreas Lennartsson
,
Marina Lizio
,
Fernando López-Redondo
,
Joachim Luginbühl
,
Shiori Maeda
,
Vsevolod J. Makeev
,
Luigi Marchionni
,
Yulia A. Medvedeva
,
Aki Minoda
,
Ferenc Müller
,
Manuel Muñoz-Aguirre
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Kazuhiro R. Nitta
,
Shuhei Noguchi
,
Yukihiko Noro
,
Ramil Nurtdinov
,
Yasushi Okazaki
,
Valerio Orlando
,
Denis Paquette
,
Callum J.C. Parr
,
Owen J.L. Rackham
,
Patrizia Rizzu
,
Diego Fernando Sánchez Martinez
,
Albin Sandelin
,
Pillay Sanjana
,
Colin A.M. Semple
,
Youtaro Shibayama
,
Divya M. Sivaraman
,
Takahiro Suzuki
,
Suzannah C. Szumowski
,
Michihira Tagami
,
Martin S. Taylor
,
Chikashi Terao
,
Malte Thodberg
,
Supat Thongjuea
,
Vidisha Tripathi
,
Igor Ulitsky
,
Roberto Verardo
,
Ilya E. Vorontsov
,
Chinatsu Yamamoto
,
Robert S. Young
,
J. Kenneth Baillie
,
Alistair R.R. Forrest
,
Roderic Guigó
,
Michael M. Hoffman
,
Chung Chau Hon
,
Takeya Kasukawa
,
Sakari Kauppinen
,
Juha Kere
,
Boris Lenhard
,
Claudio Schneider
,
Harukazu Suzuki
,
Ken Yagi
,
Michiel J.L. de Hoon
,
Jay W. Shin
,
and
Piero Carninci
Genome Res.
July 2020
30
:
1060
-
1072
;
Published in Advance
July 27, 2020
,
doi:
10.1101/gr.254219.119
Abstract
Full Text
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Research
:
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
Kosuke Hashimoto
,
Ana Maria Suzuki
,
Alexandre Dos Santos
,
Christophe Desterke
,
Agnese Collino
,
Serena Ghisletti
,
Emilie Braun
,
Alessandro Bonetti
,
Alexandre Fort
,
Xian-Yang Qin
,
Enrico Radaelli
,
Bogumil Kaczkowski
,
Alistair R.R. Forrest
,
Soichi Kojima
,
Didier Samuel
,
Gioacchino Natoli
,
Marie Annick Buendia
,
Jamila Faivre
,
and
Piero Carninci
Genome Res.
December 2015
25
:
1812
-
1824
;
Published in Advance
October 28, 2015
,
doi:
10.1101/gr.191031.115
Abstract
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Research
:
The frequent evolutionary birth and death of functional promoters in mouse and human
Robert S. Young
,
Yoshihide Hayashizaki
,
Robin Andersson
,
Albin Sandelin
,
Hideya Kawaji
,
Masayoshi Itoh
,
Timo Lassmann
,
Piero Carninci
,
The FANTOM Consortium
,
Wendy A. Bickmore
,
Alistair R. Forrest
,
and
Martin S. Taylor
Genome Res.
October 2015
25
:
1546
-
1557
;
Published in Advance
July 30, 2015
,
doi:
10.1101/gr.190546.115
Abstract
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Method
:
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Hideya Kawaji
,
Marina Lizio
,
Masayoshi Itoh
,
Mutsumi Kanamori-Katayama
,
Ai Kaiho
,
Hiromi Nishiyori-Sueki
,
Jay W. Shin
,
Miki Kojima-Ishiyama
,
Mitsuoki Kawano
,
Mitsuyoshi Murata
,
Noriko Ninomiya-Fukuda
,
Sachi Ishikawa-Kato
,
Sayaka Nagao-Sato
,
Shohei Noma
,
Yoshihide Hayashizaki
,
Alistair R.R. Forrest
,
Piero Carninci
,
and
The FANTOM Consortium
Genome Res.
April 2014
24
:
708
-
717
;
Published in Advance
March 27, 2014
,
doi:
10.1101/gr.156232.113
Abstract
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Method
:
Unamplified cap analysis of gene expression on a single-molecule sequencer
Mutsumi Kanamori-Katayama
,
Masayoshi Itoh
,
Hideya Kawaji
,
Timo Lassmann
,
Shintaro Katayama
,
Miki Kojima
,
Nicolas Bertin
,
Ai Kaiho
,
Noriko Ninomiya
,
Carsten O. Daub
,
Piero Carninci
,
Alistair R.R. Forrest
,
and
Yoshihide Hayashizaki
Genome Res.
July 2011
21
:
1150
-
1159
;
Published in Advance
May 19, 2011
,
doi:
10.1101/gr.115469.110
Abstract
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LETTER
:
Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
Rita Sousa-Nunes
,
Amer Ahmed Rana
,
Ross Kettleborough
,
Joshua M. Brickman
,
Melanie Clements
,
Alistair Forrest
,
Sean Grimmond
,
Philip Avner
,
James C. Smith
,
Sally L. Dunwoodie
,
and
Rosa S.P. Beddington
Genome Res.
December 2003
13
:
2609
-
2620
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1362303
Abstract
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LETTER
:
Exploration of the Cell-Cycle Genes Found Within the RIKEN FANTOM2 Data Set
Alistair R.R. Forrest
,
Darrin Taylor
,
RIKEN GER Group
,
GSL Members
,
and
Sean Grimmond
Genome Res.
June 2003
13
:
1366
-
1375
;
doi:
10.1101/gr.1012403
Abstract
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