Searching journal content for Ali Mortazavi in author.

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  1. Research: Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy
    • Lujia Chen,
    • Xiangduo Kong,
    • Kevin G. Johnston,
    • Ali Mortazavi,
    • Todd C. Holmes,
    • Zhiqun Tan,
    • Kyoko Yokomori,
    • and Xiangmin Xu
    Genome Res. May 2024 34: 665-679; Published in Advance May 22, 2024, doi:10.1101/gr.278717.123
    OPEN ACCESS ARTICLE
  2. Resource: Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types
    • Jill E. Moore,
    • Xiao-Ou Zhang,
    • Shaimae I. Elhajjajy,
    • Kaili Fan,
    • Henry E. Pratt,
    • Fairlie Reese,
    • Ali Mortazavi,
    • and Zhiping Weng
    Genome Res. February 2022 32: 389-402; Published in Advance December 23, 2021, doi:10.1101/gr.275723.121
  3. Resource: Dynamics of microRNA expression during mouse prenatal development
    • Sorena Rahmanian,
    • Rabi Murad,
    • Alessandra Breschi,
    • Weihua Zeng,
    • Mark Mackiewicz,
    • Brian Williams,
    • Carrie A. Davis,
    • Brian Roberts,
    • Sarah Meadows,
    • Dianna Moore,
    • Diane Trout,
    • Chris Zaleski,
    • Alex Dobin,
    • Lei-Hoon Sei,
    • Jorg Drenkow,
    • Alex Scavelli,
    • Thomas R. Gingeras,
    • Barbara J. Wold,
    • Richard M. Myers,
    • Roderic Guigó,
    • and Ali Mortazavi
    Genome Res. November 2019 29: 1900-1909; Published in Advance October 23, 2019, doi:10.1101/gr.248997.119
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
    • Manuel Tardaguila,
    • Lorena de la Fuente,
    • Cristina Marti,
    • Cécile Pereira,
    • Francisco Jose Pardo-Palacios,
    • Hector del Risco,
    • Marc Ferrell,
    • Maravillas Mellado,
    • Marissa Macchietto,
    • Kenneth Verheggen,
    • Mariola Edelmann,
    • Iakes Ezkurdia,
    • Jesus Vazquez,
    • Michael Tress,
    • Ali Mortazavi,
    • Lennart Martens,
    • Susana Rodriguez-Navarro,
    • Victoria Moreno-Manzano,
    • and Ana Conesa
    Genome Res. July 2018 28: 1096; doi:10.1101/gr.239137.118
    OPEN ACCESS ARTICLE
  5. Method: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
    • Manuel Tardaguila,
    • Lorena de la Fuente,
    • Cristina Marti,
    • Cécile Pereira,
    • Francisco Jose Pardo-Palacios,
    • Hector del Risco,
    • Marc Ferrell,
    • Maravillas Mellado,
    • Marissa Macchietto,
    • Kenneth Verheggen,
    • Mariola Edelmann,
    • Iakes Ezkurdia,
    • Jesus Vazquez,
    • Michael Tress,
    • Ali Mortazavi,
    • Lennart Martens,
    • Susana Rodriguez-Navarro,
    • Victoria Moreno-Manzano,
    • and Ana Conesa
    Genome Res. March 2018 28: 396-411; Published in Advance February 9, 2018, doi:10.1101/gr.222976.117
    OPEN ACCESS ARTICLE
  6. Resource: Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
    • Ali Mortazavi,
    • Shirley Pepke,
    • Camden Jansen,
    • Georgi K. Marinov,
    • Jason Ernst,
    • Manolis Kellis,
    • Ross C. Hardison,
    • Richard M. Myers,
    • and Barbara J. Wold
    Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
    OPEN ACCESS ARTICLE
  7. Research: RNA editing in the human ENCODE RNA-seq data
    • Eddie Park,
    • Brian Williams,
    • Barbara J. Wold,
    • and Ali Mortazavi
    Genome Res. September 2012 22: 1626-1633; doi:10.1101/gr.134957.111
    OPEN ACCESS ARTICLE
  8. Research: Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
    • Timothy E. Reddy,
    • Jason Gertz,
    • Florencia Pauli,
    • Katerina S. Kucera,
    • Katherine E. Varley,
    • Kimberly M. Newberry,
    • Georgi K. Marinov,
    • Ali Mortazavi,
    • Brian A. Williams,
    • Lingyun Song,
    • Gregory E. Crawford,
    • Barbara Wold,
    • Huntington F. Willard,
    • and Richard M. Myers
    Genome Res. May 2012 22: 860-869; Published in Advance February 2, 2012, doi:10.1101/gr.131201.111
  9. Method: Scaffolding a Caenorhabditis nematode genome with RNA-seq
    • Ali Mortazavi,
    • Erich M. Schwarz,
    • Brian Williams,
    • Lorian Schaeffer,
    • Igor Antoshechkin,
    • Barbara J. Wold,
    • and Paul W. Sternberg
    Genome Res. December 2010 20: 1740-1747; Published in Advance October 27, 2010, doi:10.1101/gr.111021.110
  10. LETTER: Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
    • Ali Mortazavi,
    • Evonne Chen Leeper Thompson,
    • Sarah T. Garcia,
    • Richard M. Myers,
    • and Barbara Wold
    Genome Res. October 2006 16: 1208-1221; Published in Advance September 8, 2006, doi:10.1101/gr.4997306
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