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Alexander E. Urban
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Displaying results 1-8 of
8
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Research
:
Complex mosaic structural variations in human fetal brains
Shobana Sekar
,
Livia Tomasini
,
Christos Proukakis
,
Taejeong Bae
,
Logan Manlove
,
Yeongjun Jang
,
Soraya Scuderi
,
Bo Zhou
,
Maria Kalyva
,
Anahita Amiri
,
Jessica Mariani
,
Fritz J. Sedlazeck
,
Alexander E. Urban
,
Flora M. Vaccarino
,
and
Alexej Abyzov
Genome Res.
December 2020
30
:
1695
-
1704
;
Published in Advance
October 29, 2020
,
doi:
10.1101/gr.262667.120
Abstract
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Resource
:
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562
Bo Zhou
,
Steve S. Ho
,
Stephanie U. Greer
,
Xiaowei Zhu
,
John M. Bell
,
Joseph G. Arthur
,
Noah Spies
,
Xianglong Zhang
,
Seunggyu Byeon
,
Reenal Pattni
,
Noa Ben-Efraim
,
Michael S. Haney
,
Rajini R. Haraksingh
,
Giltae Song
,
Hanlee P. Ji
,
Dimitri Perrin
,
Wing H. Wong
,
Alexej Abyzov
,
and
Alexander E. Urban
Genome Res.
March 2019
29
:
472
-
484
;
Published in Advance
February 8, 2019
,
doi:
10.1101/gr.234948.118
Abstract
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Research
:
One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin
Alexej Abyzov
,
Livia Tomasini
,
Bo Zhou
,
Nikolaos Vasmatzis
,
Gianfilippo Coppola
,
Mariangela Amenduni
,
Reenal Pattni
,
Michael Wilson
,
Mark Gerstein
,
Sherman Weissman
,
Alexander E. Urban
,
and
Flora M. Vaccarino
Genome Res.
April 2017
27
:
512
-
523
;
Published in Advance
February 24, 2017
,
doi:
10.1101/gr.215517.116
Abstract
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Research
:
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Alexis Battle
,
Sara Mostafavi
,
Xiaowei Zhu
,
James B. Potash
,
Myrna M. Weissman
,
Courtney McCormick
,
Christian D. Haudenschild
,
Kenneth B. Beckman
,
Jianxin Shi
,
Rui Mei
,
Alexander E. Urban
,
Stephen B. Montgomery
,
Douglas F. Levinson
,
and
Daphne Koller
Genome Res.
January 2014
24
:
14
-
24
;
Published in Advance
October 3, 2013
,
doi:
10.1101/gr.155192.113
Abstract
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Resource
:
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
Alexej Abyzov
,
Alexander E. Urban
,
Michael Snyder
,
and
Mark Gerstein
Genome Res.
June 2011
21
:
974
-
984
;
Published in Advance
February 7, 2011
,
doi:
10.1101/gr.114876.110
Abstract
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The 1000 Genomes Project
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LETTER
:
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
Philip M. Kim
,
Hugo Y.K. Lam
,
Alexander E. Urban
,
Jan O. Korbel
,
Jason Affourtit
,
Fabian Grubert
,
Xueying Chen
,
Sherman Weissman
,
Michael Snyder
,
and
Mark B. Gerstein
Genome Res.
December 2008
18
:
1865
-
1874
;
Published in Advance
October 8, 2008
,
doi:
10.1101/gr.081422.108
Abstract
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Methods
:
MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
Mattia Pelizzola
,
Yasuo Koga
,
Alexander Eckehart Urban
,
Michael Krauthammer
,
Sherman Weissman
,
Ruth Halaban
,
and
Annette M. Molinaro
Genome Res.
October 2008
18
:
1652
-
1659
;
Published in Advance
September 2, 2008
,
doi:
10.1101/gr.080721.108
Abstract
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Methods
:
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
Olof Emanuelsson
,
Ugrappa Nagalakshmi
,
Deyou Zheng
,
Joel S. Rozowsky
,
Alexander E. Urban
,
Jiang Du
,
Zheng Lian
,
Viktor Stolc
,
Sherman Weissman
,
Michael Snyder
,
and
Mark B. Gerstein
Genome Res.
June 2007
17
:
886
-
897
;
Published in Advance
November 21, 2006
,
doi:
10.1101/gr.5014606
Abstract
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OPEN ACCESS ARTICLE
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