Searching journal content for Alan P. Boyle in author.

Displaying results 1-6 of 6
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  1. Method: Multiplexed long-read plasmid validation and analysis using OnRamp
    • Camille Mumm,
    • Melissa L. Drexel,
    • Torrin L. McDonald,
    • Adam G. Diehl,
    • Jessica A. Switzenberg,
    • and Alan P. Boyle
    Genome Res. May 2023 33: 741-749; Published in Advance May 8, 2023, doi:10.1101/gr.277369.122
    OPEN ACCESS ARTICLE
  2. Method: TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence
    • Ningxin Ouyang and
    • Alan P. Boyle
    Genome Res. July 2020 30: 1040-1046; Published in Advance July 6, 2020, doi:10.1101/gr.258228.119
  3. Method: Linking disease associations with regulatory information in the human genome
    • Marc A. Schaub,
    • Alan P. Boyle,
    • Anshul Kundaje,
    • Serafim Batzoglou,
    • and Michael Snyder
    Genome Res. September 2012 22: 1748-1759; doi:10.1101/gr.136127.111
    OPEN ACCESS ARTICLE
  4. Resource: Annotation of functional variation in personal genomes using RegulomeDB
    • Alan P. Boyle,
    • Eurie L. Hong,
    • Manoj Hariharan,
    • Yong Cheng,
    • Marc A. Schaub,
    • Maya Kasowski,
    • Konrad J. Karczewski,
    • Julie Park,
    • Benjamin C. Hitz,
    • Shuai Weng,
    • J. Michael Cherry,
    • and Michael Snyder
    Genome Res. September 2012 22: 1790-1797; doi:10.1101/gr.137323.112
    OPEN ACCESS ARTICLE
  5. Resource: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Lingyun Song,
    • Zhancheng Zhang,
    • Linda L. Grasfeder,
    • Alan P. Boyle,
    • Paul G. Giresi,
    • Bum-Kyu Lee,
    • Nathan C. Sheffield,
    • Stefan Gräf,
    • Mikael Huss,
    • Damian Keefe,
    • Zheng Liu,
    • Darin London,
    • Ryan M. McDaniell,
    • Yoichiro Shibata,
    • Kimberly A. Showers,
    • Jeremy M. Simon,
    • Teresa Vales,
    • Tianyuan Wang,
    • Deborah Winter,
    • Zhuzhu Zhang,
    • Neil D. Clarke,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • Jason D. Lieb,
    • and Terrence S. Furey
    Genome Res. October 2011 21: 1757-1767; Published in Advance July 12, 2011, doi:10.1101/gr.121541.111
    OPEN ACCESS ARTICLE
  6. Method: High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Alan P. Boyle,
    • Lingyun Song,
    • Bum-Kyu Lee,
    • Darin London,
    • Damian Keefe,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • and Terrence S. Furey
    Genome Res. March 2011 21: 456-464; Published in Advance November 24, 2010, doi:10.1101/gr.112656.110
    OPEN ACCESS ARTICLE
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