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Adam D. Ewing
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Research
:
Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development
Patricia Gerdes
,
Dorothy Chan
,
Mischa Lundberg
,
Francisco J. Sanchez-Luque
,
Gabriela O. Bodea
,
Adam D. Ewing
,
Geoffrey J. Faulkner
,
and
Sandra R. Richardson
Genome Res.
September 2023
33
:
1465
-
1481
;
Published in Advance
October 5, 2023
,
doi:
10.1101/gr.278003.123
Abstract
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Research
:
Somatic retrotransposition in the developing rhesus macaque brain
Victor Billon
,
Francisco J. Sanchez-Luque
,
Jay Rasmussen
,
Gabriela O. Bodea
,
Daniel J. Gerhardt
,
Patricia Gerdes
,
Seth W. Cheetham
,
Stephanie N. Schauer
,
Prabha Ajjikuttira
,
Thomas J. Meyer
,
Cora E. Layman
,
Kimberly A. Nevonen
,
Natasha Jansz
,
Jose L. Garcia-Perez
,
Sandra R. Richardson
,
Adam D. Ewing
,
Lucia Carbone
,
and
Geoffrey J. Faulkner
Genome Res.
July 2022
32
:
1298
-
1314
;
Published in Advance
June 21, 2022
,
doi:
10.1101/gr.276451.121
Abstract
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Research
:
A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci
Elisabeth J. van Bree
,
Rita L.F.P. Guimarães
,
Mischa Lundberg
,
Elena R. Blujdea
,
Jimi L. Rosenkrantz
,
Fred T.G. White
,
Josse Poppinga
,
Paula Ferrer-Raventós
,
Anne-Fleur E. Schneider
,
Isabella Clayton
,
David Haussler
,
Marcel J.T. Reinders
,
Henne Holstege
,
Adam D. Ewing
,
Colette Moses
,
and
Frank M.J. Jacobs
Genome Res.
April 2022
32
:
656
-
670
;
Published in Advance
March 24, 2022
,
doi:
10.1101/gr.275515.121
Abstract
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Research
:
L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis
Stephanie N. Schauer
,
Patricia E. Carreira
,
Ruchi Shukla
,
Daniel J. Gerhardt
,
Patricia Gerdes
,
Francisco J. Sanchez-Luque
,
Paola Nicoli
,
Michaela Kindlova
,
Serena Ghisletti
,
Alexandre Dos Santos
,
Delphine Rapoud
,
Didier Samuel
,
Jamila Faivre
,
Adam D. Ewing
,
Sandra R. Richardson
,
and
Geoffrey J. Faulkner
Genome Res.
May 2018
28
:
639
-
653
;
Published in Advance
April 11, 2018
,
doi:
10.1101/gr.226993.117
Abstract
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Research
:
Heritable L1 retrotransposition in the mouse primordial germline and early embryo
Sandra R. Richardson
,
Patricia Gerdes
,
Daniel J. Gerhardt
,
Francisco J. Sanchez-Luque
,
Gabriela-Oana Bodea
,
Martin Muñoz-Lopez
,
J. Samuel Jesuadian
,
Marie-Jeanne H.C. Kempen
,
Patricia E. Carreira
,
Jeffrey A. Jeddeloh
,
Jose L. Garcia-Perez
,
Haig H. Kazazian, Jr.
,
Adam D. Ewing
,
and
Geoffrey J. Faulkner
Genome Res.
August 2017
27
:
1395
-
1405
;
Published in Advance
May 8, 2017
,
doi:
10.1101/gr.219022.116
Abstract
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Research
:
Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
Adam D. Ewing
,
Anthony Gacita
,
Laura D. Wood
,
Florence Ma
,
Dongmei Xing
,
Min-Sik Kim
,
Srikanth S. Manda
,
Gabriela Abril
,
Gavin Pereira
,
Alvin Makohon-Moore
,
Leendert H.J. Looijenga
,
Ad J.M. Gillis
,
Ralph H. Hruban
,
Robert A. Anders
,
Katharine E. Romans
,
Akhilesh Pandey
,
Christine A. Iacobuzio-Donahue
,
Bert Vogelstein
,
Kenneth W. Kinzler
,
Haig H. Kazazian, Jr.
,
and
Szilvia Solyom
Genome Res.
October 2015
25
:
1536
-
1545
;
Published in Advance
August 10, 2015
,
doi:
10.1101/gr.196238.115
Abstract
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Research
:
Extensive somatic L1 retrotransposition in colorectal tumors
Szilvia Solyom
,
Adam D. Ewing
,
Eric P. Rahrmann
,
Tara Doucet
,
Heather H. Nelson
,
Michael B. Burns
,
Reuben S. Harris
,
David F. Sigmon
,
Alex Casella
,
Bracha Erlanger
,
Sarah Wheelan
,
Kyle R. Upton
,
Ruchi Shukla
,
Geoffrey J. Faulkner
,
David A. Largaespada
,
and
Haig H. Kazazian, Jr.
Genome Res.
December 2012
22
:
2328
-
2338
;
Published in Advance
September 11, 2012
,
doi:
10.1101/gr.145235.112
Abstract
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Resource
:
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
Adam D. Ewing
and
Haig H. Kazazian, Jr.
Genome Res.
June 2011
21
:
985
-
990
;
Published in Advance
October 27, 2010
,
doi:
10.1101/gr.114777.110
Abstract
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The 1000 Genomes Project
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Method
:
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
Adam D. Ewing
and
Haig H. Kazazian, Jr
Genome Res.
September 2010
20
:
1262
-
1270
;
Published in Advance
May 20, 2010
,
doi:
10.1101/gr.106419.110
Abstract
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Letter
:
Exon-trapping mediated by the human retrotransposon SVA
Dustin C. Hancks
,
Adam D. Ewing
,
Jesse E. Chen
,
Katsushi Tokunaga
,
and
Haig H. Kazazian, Jr
Genome Res.
November 2009
19
:
1983
-
1991
;
Published in Advance
July 27, 2009
,
doi:
10.1101/gr.093153.109
Abstract
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