Searching journal content for A D Smith in author.

Displaying results 1-10 of 24
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  1. Method: Molecular barcoding of native RNAs using nanopore sequencing and deep learning
    • Martin A. Smith,
    • Tansel Ersavas,
    • James M. Ferguson,
    • Huanle Liu,
    • Morghan C. Lucas,
    • Oguzhan Begik,
    • Lilly Bojarski,
    • Kirston Barton,
    • and Eva Maria Novoa
    Genome Res. September 2020 30: 1345-1353; Published in Advance September 9, 2020, doi:10.1101/gr.260836.120
  2. Research: Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma
    • Gonzalo Lopez,
    • Karina L. Conkrite,
    • Miriam Doepner,
    • Komal S. Rathi,
    • Apexa Modi,
    • Zalman Vaksman,
    • Lance M. Farra,
    • Eric Hyson,
    • Moataz Noureddine,
    • Jun S. Wei,
    • Malcolm A. Smith,
    • Shahab Asgharzadeh,
    • Robert C. Seeger,
    • Javed Khan,
    • Jaime Guidry Auvil,
    • Daniela S. Gerhard,
    • John M. Maris,
    • and Sharon J. Diskin
    Genome Res. September 2020 30: 1228-1242; Published in Advance August 13, 2020, doi:10.1101/gr.252106.119
  3. Corrigendum: Corrigendum: Evolutionary expansion of DNA hypomethylation in the mammalian germline genome
    • Jianghan Qu,
    • Emily Hodges,
    • Antoine Molaro,
    • Pascal Gagneux,
    • Matthew D. Dean,
    • Gregory J. Hannon,
    • and Andrew D. Smith
    Genome Res. May 2018 28: 766.2; doi:10.1101/gr.236885.118
    OPEN ACCESS ARTICLE
  4. Research: Evolutionary expansion of DNA hypomethylation in the mammalian germline genome
    • Jianghan Qu,
    • Emily Hodges,
    • Antoine Molaro,
    • Pascal Gagneux,
    • Matthew D. Dean,
    • Gregory J. Hannon,
    • and Andrew D. Smith
    Genome Res. February 2018 28: 145-158; Published in Advance December 19, 2017, doi:10.1101/gr.225896.117
  5. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  6. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  7. Research: De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
    • Felix Schlesinger,
    • Andrew D. Smith,
    • Thomas R. Gingeras,
    • Gregory J. Hannon,
    • and Emily Hodges
    Genome Res. October 2013 23: 1601-1614; Published in Advance June 28, 2013, doi:10.1101/gr.157271.113
  8. Research: The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
    • Michael Regulski,
    • Zhenyuan Lu,
    • Jude Kendall,
    • Mark T.A. Donoghue,
    • Jon Reinders,
    • Victor Llaca,
    • Stephane Deschamps,
    • Andrew Smith,
    • Dan Levy,
    • W. Richard McCombie,
    • Scott Tingey,
    • Antoni Rafalski,
    • James Hicks,
    • Doreen Ware,
    • and Robert A. Martienssen
    Genome Res. October 2013 23: 1651-1662; Published in Advance June 5, 2013, doi:10.1101/gr.153510.112
    OPEN ACCESS ARTICLE
  9. Research: Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence
    • Lavinia Gordon,
    • Jihoon E. Joo,
    • Joseph E. Powell,
    • Miina Ollikainen,
    • Boris Novakovic,
    • Xin Li,
    • Roberta Andronikos,
    • Mark N. Cruickshank,
    • Karen N. Conneely,
    • Alicia K. Smith,
    • Reid S. Alisch,
    • Ruth Morley,
    • Peter M. Visscher,
    • Jeffrey M. Craig,
    • and Richard Saffery
    Genome Res. August 2012 22: 1395-1406; Published in Advance July 16, 2012, doi:10.1101/gr.136598.111
  10. Methods: Quantitative phenotyping via deep barcode sequencing
    • Andrew M. Smith,
    • Lawrence E. Heisler,
    • Joseph Mellor,
    • Fiona Kaper,
    • Michael J. Thompson,
    • Mark Chee,
    • Frederick P. Roth,
    • Guri Giaever,
    • and Corey Nislow
    Genome Res. October 2009 19: 1836-1842; Published in Advance July 21, 2009, doi:10.1101/gr.093955.109
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