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  1. Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
    • Xin Li,
    • San-Gang He,
    • Wen-Rong Li,
    • Ling-Yun Luo,
    • Ze Yan,
    • Dong-Xin Mo,
    • Xing Wan,
    • Feng-Hua Lv,
    • Ji Yang,
    • Ya-Xi Xu,
    • Juan Deng,
    • Qiang-Hui Zhu,
    • Xing-Long Xie,
    • Song-Song Xu,
    • Chen-Xi Liu,
    • Xin-Rong Peng,
    • Bin Han,
    • Zhong-Hui Li,
    • Lei Chen,
    • Jian-Lin Han,
    • Xue-Zhi Ding,
    • Renqing Dingkao,
    • Yue-Feng Chu,
    • Jin-Yan Wu,
    • Li-Min Wang,
    • Ping Zhou,
    • Ming-Jun Liu,
    • and Meng-Hua Li
    Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
    OPEN ACCESS ARTICLE
  2. Research: Chromatin architecture transitions from zebrafish sperm through early embryogenesis
    • Candice L. Wike,
    • Yixuan Guo,
    • Mengyao Tan,
    • Ryohei Nakamura,
    • Dana Klatt Shaw,
    • Noelia Díaz,
    • Aneasha F. Whittaker-Tademy,
    • Neva C. Durand,
    • Erez Lieberman Aiden,
    • Juan M. Vaquerizas,
    • David Grunwald,
    • Hiroyuki Takeda,
    • and Bradley R. Cairns
    Genome Res. June 2021 31: 981-994; Published in Advance May 18, 2021, doi:10.1101/gr.269860.120
    OPEN ACCESS ARTICLE
  3. Research: Epstein–Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci
    • Ted Hong,
    • Sreeja Parameswaran,
    • Omer A. Donmez,
    • Daniel Miller,
    • Carmy Forney,
    • Michael Lape,
    • Mariana Saint Just Ribeiro,
    • Jun Liang,
    • Lee E. Edsall,
    • Albert F. Magnusen,
    • William Miller,
    • Iouri Chepelev,
    • John B. Harley,
    • Bo Zhao,
    • Leah C. Kottyan,
    • and Matthew T. Weirauch
    Genome Res. December 2021 31: 2185-2198; Published in Advance November 19, 2021, doi:10.1101/gr.264705.120
    OPEN ACCESS ARTICLE
  4. Resource: RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse
    • Catherine M. Farrell,
    • Tamara Goldfarb,
    • Sanjida H. Rangwala,
    • Alexander Astashyn,
    • Olga D. Ermolaeva,
    • Vichet Hem,
    • Kenneth S. Katz,
    • Vamsi K. Kodali,
    • Frank Ludwig,
    • Craig L. Wallin,
    • Kim D. Pruitt,
    • and Terence D. Murphy
    Genome Res. January 2022 32: 175-188; Published in Advance December 7, 2021, doi:10.1101/gr.275819.121
  5. Resource: Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii
    • Carlos Vargas-Chavez,
    • Neil Michel Longo Pendy,
    • Sandrine E. Nsango,
    • Laura Aguilera,
    • Diego Ayala,
    • and Josefa González
    Genome Res. January 2022 32: 189-202; Published in Advance December 29, 2021, doi:10.1101/gr.275761.121
  6. Research: Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans
    • James A. Cahill,
    • Joel Armstrong,
    • Alden Deran,
    • Carolyn J. Khoury,
    • Benedict Paten,
    • David Haussler,
    • and Erich D. Jarvis
    Genome Res. November 2021 31: 2035-2049; Published in Advance October 19, 2021, doi:10.1101/gr.275989.121
    OPEN ACCESS ARTICLE
  7. Research: A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci
    • Elisabeth J. van Bree,
    • Rita L.F.P. Guimarães,
    • Mischa Lundberg,
    • Elena R. Blujdea,
    • Jimi L. Rosenkrantz,
    • Fred T.G. White,
    • Josse Poppinga,
    • Paula Ferrer-Raventós,
    • Anne-Fleur E. Schneider,
    • Isabella Clayton,
    • David Haussler,
    • Marcel J.T. Reinders,
    • Henne Holstege,
    • Adam D. Ewing,
    • Colette Moses,
    • and Frank M.J. Jacobs
    Genome Res. April 2022 32: 656-670; Published in Advance March 24, 2022, doi:10.1101/gr.275515.121
    OPEN ACCESS ARTICLE
  8. Research: MYC overexpression leads to increased chromatin interactions at super-enhancers and MYC binding sites
    • Yi Xiang See,
    • Kaijing Chen,
    • and Melissa J. Fullwood
    Genome Res. April 2022 32: 629-642; Published in Advance February 3, 2022, doi:10.1101/gr.276313.121
    OPEN ACCESS ARTICLE
  9. Method: A general calculus of fitness landscapes finds genes under selection in cancers
    • Teng-Kuei Hsu,
    • Jennifer Asmussen,
    • Amanda Koire,
    • Byung-Kwon Choi,
    • Mayur A. Gadhikar,
    • Eunna Huh,
    • Chih-Hsu Lin,
    • Daniel M. Konecki,
    • Young Won Kim,
    • Curtis R. Pickering,
    • Marek Kimmel,
    • Lawrence A. Donehower,
    • Mitchell J. Frederick,
    • Jeffrey N. Myers,
    • Panagiotis Katsonis,
    • and Olivier Lichtarge
    Genome Res. May 2022 32: 916-929; Published in Advance March 17, 2022, doi:10.1101/gr.275811.121
    OPEN ACCESS ARTICLE
  10. Resource: Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
    • José Carlos Montañés,
    • Marta Huertas,
    • Simone G. Moro,
    • William R. Blevins,
    • Mercè Carmona,
    • José Ayté,
    • Elena Hidalgo,
    • and M. Mar Albà
    Genome Res. June 2022 32: 1215-1227; Published in Advance May 26, 2022, doi:10.1101/gr.276516.121
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