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  1. Research: CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
    • Marlies E. Oomen,
    • Anders S. Hansen,
    • Yu Liu,
    • Xavier Darzacq,
    • and Job Dekker
    Genome Res. February 2019 29: 236-249; Published in Advance January 17, 2019, doi:10.1101/gr.241547.118
  2. Resource: A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation
    • Andreas J. Gruber,
    • Ralf Schmidt,
    • Andreas R. Gruber,
    • Georges Martin,
    • Souvik Ghosh,
    • Manuel Belmadani,
    • Walter Keller,
    • and Mihaela Zavolan
    Genome Res. August 2016 26: 1145-1159; Published in Advance July 5, 2016, doi:10.1101/gr.202432.115
    OPEN ACCESS ARTICLE
  3. Research: Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations
    • Juan L. Rodriguez-Flores,
    • Khalid Fakhro,
    • Francisco Agosto-Perez,
    • Monica D. Ramstetter,
    • Leonardo Arbiza,
    • Thomas L. Vincent,
    • Amal Robay,
    • Joel A. Malek,
    • Karsten Suhre,
    • Lotfi Chouchane,
    • Ramin Badii,
    • Ajayeb Al-Nabet Al-Marri,
    • Charbel Abi Khalil,
    • Mahmoud Zirie,
    • Amin Jayyousi,
    • Jacqueline Salit,
    • Alon Keinan,
    • Andrew G. Clark,
    • Ronald G. Crystal,
    • and Jason G. Mezey
    Genome Res. February 2016 26: 151-162; Published in Advance January 4, 2016, doi:10.1101/gr.191478.115
    OPEN ACCESS ARTICLE
  4. Research: Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
    • Yi-Jun Sheu,
    • Justin B. Kinney,
    • and Bruce Stillman
    Genome Res. March 2016 26: 315-330; Published in Advance January 5, 2016, doi:10.1101/gr.195248.115
  5. Resource: Single haplotype assembly of the human genome from a hydatidiform mole
    • Karyn Meltz Steinberg,
    • Valerie A. Schneider,
    • Tina A. Graves-Lindsay,
    • Robert S. Fulton,
    • Richa Agarwala,
    • John Huddleston,
    • Sergey A. Shiryev,
    • Aleksandr Morgulis,
    • Urvashi Surti,
    • Wesley C. Warren,
    • Deanna M. Church,
    • Evan E. Eichler,
    • and Richard K. Wilson
    Genome Res. December 2014 24: 2066-2076; Published in Advance November 4, 2014, doi:10.1101/gr.180893.114
  6. Research: Replication timing networks reveal a link between transcription regulatory circuits and replication timing control
    • Juan Carlos Rivera-Mulia,
    • Sebo Kim,
    • Haitham Gabr,
    • Abhijit Chakraborty,
    • Ferhat Ay,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. September 2019 29: 1415-1428; Published in Advance August 21, 2019, doi:10.1101/gr.247049.118
  7. Research: Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
    • Alexander K. Godfrey,
    • Sahin Naqvi,
    • Lukáš Chmátal,
    • Joel M. Chick,
    • Richard N. Mitchell,
    • Steven P. Gygi,
    • Helen Skaletsky,
    • and David C. Page
    Genome Res. June 2020 30: 860-873; Published in Advance May 27, 2020, doi:10.1101/gr.261248.120
  8. Method: HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
    • Sergey Nurk,
    • Brian P. Walenz,
    • Arang Rhie,
    • Mitchell R. Vollger,
    • Glennis A. Logsdon,
    • Robert Grothe,
    • Karen H. Miga,
    • Evan E. Eichler,
    • Adam M. Phillippy,
    • and Sergey Koren
    Genome Res. September 2020 30: 1291-1305; Published in Advance August 14, 2020, doi:10.1101/gr.263566.120
    OPEN ACCESS ARTICLE
  9. Method: Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples
    • Sergey Aganezov and
    • Benjamin J. Raphael
    Genome Res. September 2020 30: 1274-1290; Published in Advance September 4, 2020, doi:10.1101/gr.256701.119
  10. Research: KDM1A maintains genome-wide homeostasis of transcriptional enhancers
    • Saurabh Agarwal,
    • Katherine M. Bonefas,
    • Patricia M. Garay,
    • Emily Brookes,
    • Yumie Murata-Nakamura,
    • Robert S. Porter,
    • Todd S. Macfarlan,
    • Bing Ren,
    • and Shigeki Iwase
    Genome Res. February 2021 31: 186-197; Published in Advance January 7, 2021, doi:10.1101/gr.234559.118
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