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Resource: Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing
- Thomas Zichner,
- David A. Garfield,
- Tobias Rausch,
- Adrian M. Stütz,
- Enrico Cannavó,
- Martina Braun,
- Eileen E.M. Furlong,
- and Jan O. Korbel
Genome Res. March 2013 23: 568-579; Published in Advance December 6, 2012, doi:10.1101/gr.142646.112
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Research: HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses
- Rafael Contreras-Galindo,
- Mark H. Kaplan,
- Shirley He,
- Angie C. Contreras-Galindo,
- Marta J. Gonzalez-Hernandez,
- Ferdinand Kappes,
- Derek Dube,
- Susana M. Chan,
- Dan Robinson,
- Fan Meng,
- Manhong Dai,
- Scott D. Gitlin,
- Arul M. Chinnaiyan,
- Gilbert S. Omenn,
- and David M. Markovitz
Genome Res. September 2013 23: 1505-1513; Published in Advance May 8, 2013, doi:10.1101/gr.144303.112
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Method: Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control
- Grzegorz M. Burzynski,
- Xylena Reed,
- Leila Taher,
- Zachary E. Stine,
- Takeshi Matsui,
- Ivan Ovcharenko,
- and Andrew S. McCallion
Genome Res. November 2012 22: 2278-2289; Published in Advance July 3, 2012, doi:10.1101/gr.139717.112
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Method: Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies
- Paul Geeleher,
- Zhenyu Zhang,
- Fan Wang,
- Robert F. Gruener,
- Aritro Nath,
- Gladys Morrison,
- Steven Bhutra,
- Robert L. Grossman,
- and R. Stephanie Huang
Genome Res. October 2017 27: 1743-1751; Published in Advance August 28, 2017, doi:10.1101/gr.221077.117
...approved for BRAF-mutant cancer . Nat Rev Drug Discov 11 : 873 886 . The Cancer Genome Atlas Research Network , Weinstein JN , Collisson EA , Mills GB , Shaw KRM , Ozenberger BA , Ellrott K , Shmulevich I , Sander C , Stuart JM . 2013 . The Cancer Genome Atlas Pan-Cancer analysis project . Nat Genet 45 ...
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Perspective: The impact of long-read sequencing on human population-scale genomics
- Tobias Rausch,
- Tobias Marschall,
- and Jan O. Korbel
Genome Res. April 2025 35: 593-598; doi:10.1101/gr.280120.124
..., Zion TN, Portik DM, Saunders CT, et al. 2023. Direct haplotype-resolved 5-base HiFi sequencing for -wide profiling of hypermethylation outliers in a rare disease cohort. Nat Commun 14: 3090. doi:10.1038/s41467-023-38782-1 Choo Z-N, Behr JM, Deshpande A, Hadi K, Yao X, Tian H, Takai K, Zakusilo G ...
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Review: Recent advances in methods to characterize archaic introgression in modern humans
- David Peede,
- Mayra M. Bañuelos,
- Jazeps Medina Tretmanis,
- Miriam Miyagi,
- and Emilia Huerta-Sánchez
Genome Res. February 2026 36: 239-256; Published in Advance January 16, 2026, doi:10.1101/gr.278993.124
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LETTER: A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications
- Xinwei She,
- Ge Liu,
- Mario Ventura,
- Shaying Zhao,
- Doriana Misceo,
- Roberta Roberto,
- Maria Francesca Cardone,
- Mariano Rocchi,
- NISC Comparative Sequencing Program,
- Eric D. Green,
- Nicoletta Archidiacano,
- and Evan E. Eichler
Genome Res. May 2006 16: 576-583; Published in Advance April 10, 2006, doi:10.1101/gr.4949406
.... Linardopoulou E.V. , Williams E.M. , Fan Y. , Friedman C. , Young J.M. , Trask B.J. ( 2005 ) Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 437 : 94 100 . Liu G. , Zhao S. , Bailey J.A. , Sahinalp S.C. , Alkan C. , Tuzun E. , Green E.D. , Eichler E ...
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LETTER: Rapid evolution of an X-linked microRNA cluster in primates
- Rui Zhang,
- Yi Peng,
- Wen Wang,
- and Bing Su
Genome Res. May 2007 17: 612-617; Published in Advance April 6, 2007, doi:10.1101/gr.6146507
.... Han, J. , Lee, Y. , Yeom, K.H. , Nam, J.W. , Heo, I. , Rhee, J.K. , Sohn, S.Y. , Cho, Y. , Zhang, B.T. , Kim, V.N. ( 2006 ) Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex . Cell 125 : 887 901 . Hancock, J.M. , Tautz, D. , Dover, G.A. ( 1988 ) Evolution ...
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LETTER: Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels
- Martin Bengtsson,
- Anders Ståhlberg,
- Patrik Rorsman,
- and Mikael Kubista
Genome Res. October 2005 15: 1388-1392; doi:10.1101/gr.3820805
...and exocytosis in mouse glucagon-secreting -cells. Diabetes 49 : 1500 -1510. Bishop, A.E. and Polak, J.M. 1997 . The anatomy, organisation and ultrastructure of the islets of Langerhans. In Textbook of diabetes (eds. J. Pickup and G. Williams), pp. 6.1 -6.16. Blackwell Science, Oxford, UK. Blake, W ...
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LETTER: Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum
- Richard M.R. Coulson,
- Neil Hall,
- and Christos A. Ouzounis
Genome Res. August 2004 14: 1548-1554; Published in Advance July 15, 2004, doi:10.1101/gr.2218604
.... 2000 . Analysis of the sequence of the flowering plant Arabidopsis thaliana. Nature 408 : 796 815. Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. 2000 . Gene ontology: Tool for the unification of biology ...

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