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REVIEW: Basic methods for the detection of PCR products.
- F J Jenkins
Genome Res. April 1994 3: S77-S82
...Virol. 129 : 363 366 . 11.. Collandre, H., , Aubin, J.-T. , Agut, H. , Bechet, J.-M. , Montagnier. L. Collandre, H., Aubin, J.-T. Agut, H. Bechet, J.-M. and Montagnier. L. 1991 . Detection of HHV-6 by the polymerase chain reaction. J. Virol. Methods 31 : 171 180 . 12.. Dewhurst, S., , McIntyre, K ...
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ARTICLE: Phylogenetics of the laboratory rat Rattus norvegicus.
- F Canzian
Genome Res. March 1997 7: 262-267; doi:10.1101/gr.7.3.262
...., Froguel, P. Parent, V. Bernard, C. Bihoreau, M.T. Portha, B. James, M.R. Penicaud, L. Lathrop, M. and Ktorza. A. 1996 . Chromosomal mapping of genetic loci associated with non-insulin dependent diabetes in the GK rat. Nature Genet. 12 : 38 43 . Goldmuntz, E.A., , Remmers, E.F. , Zha, H. , Cash, J.M ...
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Research: Maize centromeres expand and adopt a uniform size in the genetic background of oat
- Kai Wang,
- Yufeng Wu,
- Wenli Zhang,
- R. Kelly Dawe,
- and Jiming Jiang
Genome Res. January 2014 24: 107-116; Published in Advance October 7, 2013, doi:10.1101/gr.160887.113
...in potato: Implications for centromere evolution. Plant Cell 24: 35593574. Han YH, Zhang ZH, Liu CX, Liu JH, Huang SW, Jiang JM, Jin WW. 2009. Centromere repositioning in cucurbit species: Implication of the genomic impact from centromere activation and inactivation. Proc Natl Acad Sci 106: 14937 ...
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Resource: Inversion variants in human and primate genomes
- Claudia Rita Catacchio,
- Flavia Angela Maria Maggiolini,
- Pietro D'Addabbo,
- Miriana Bitonto,
- Oronzo Capozzi,
- Martina Lepore Signorile,
- Mattia Miroballo,
- Nicoletta Archidiacono,
- Evan E. Eichler,
- Mario Ventura,
- and Francesca Antonacci
Genome Res. May 18, 2018 ; Published in Advance May 18, 2018, doi:10.1101/gr.234831.118
....A.M.M. contributed to data interpretation. F.A., C.R.C., and F.A.M.M. wrote the manuscript. All authors read and approved the final manuscript. References Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, et al. 2009. Personalized copy number and segmental ...
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Research: Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
- Gary C. Hon,
- R. David Hawkins,
- Otavia L. Caballero,
- Christine Lo,
- Ryan Lister,
- Mattia Pelizzola,
- Armand Valsesia,
- Zhen Ye,
- Samantha Kuan,
- Lee E. Edsall,
- Anamaria Aranha Camargo,
- Brian J. Stevenson,
- Joseph R. Ecker,
- Vineet Bafna,
- Robert L. Strausberg,
- Andrew J. Simpson,
- and Bing Ren
Genome Res. February 2012 22: 246-258; Published in Advance December 7, 2011, doi:10.1101/gr.125872.111
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Method: Resolving the full spectrum of human genome variation using Linked-Reads
- Patrick Marks,
- Sarah Garcia,
- Alvaro Martinez Barrio,
- Kamila Belhocine,
- Jorge Bernate,
- Rajiv Bharadwaj,
- Keith Bjornson,
- Claudia Catalanotti,
- Josh Delaney,
- Adrian Fehr,
- Ian T. Fiddes,
- Brendan Galvin,
- Haynes Heaton,
- Jill Herschleb,
- Christopher Hindson,
- Esty Holt,
- Cassandra B. Jabara,
- Susanna Jett,
- Nikka Keivanfar,
- Sofia Kyriazopoulou-Panagiotopoulou,
- Monkol Lek,
- Bill Lin,
- Adam Lowe,
- Shazia Mahamdallie,
- Shamoni Maheshwari,
- Tony Makarewicz,
- Jamie Marshall,
- Francesca Meschi,
- Christopher J. O'Keefe,
- Heather Ordonez,
- Pranav Patel,
- Andrew Price,
- Ariel Royall,
- Elise Ruark,
- Sheila Seal,
- Michael Schnall-Levin,
- Preyas Shah,
- David Stafford,
- Stephen Williams,
- Indira Wu,
- Andrew Wei Xu,
- Nazneen Rahman,
- Daniel MacArthur,
- and Deanna M. Church
Genome Res. April 2019 29: 635-645; Published in Advance March 20, 2019, doi:10.1101/gr.234443.118
.... Bioinformatics 34: 353360. doi:10.1093/bioinformatics/btx712 Greer SU, Nadauld LD, Lau BT, Chen J, Wood-Bouwens C, Ford JM, Kuo CJ, Ji HP. 2017. Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases. Genome Med 9: 57. doi:10.1186/s13073-017-0447-8 Huddleston J, Eichler EE ...
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Perspective: Parlez-vous VUS?
- Gregory M. Cooper
Genome Res. October 2015 25: 1423-1426; doi:10.1101/gr.190116.115
...D, Fields S. 2010. High-resolution mapping of protein sequence-function relationships. Nat Methods 7: 741746. Frankish A, Uszczynska B, Ritchie GR, Gonzalez JM, Pervouchine D, Petryszak R, Mudge JM, Fonseca N, Brazma A, Guigo R, et al. 2015. Comparison of GENCODE and RefSeq gene annotation ...
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Research: Differences in the number of de novo mutations between individuals are due to small family-specific effects and stochasticity
- Jakob M. Goldmann,
- Juliet E. Hampstead,
- Wendy S.W. Wong,
- Amy B. Wilfert,
- Tychele N. Turner,
- Marianne A. Jonker,
- Raphael Bernier,
- Martijn A. Huynen,
- Evan E. Eichler,
- Joris A. Veltman,
- George L. Maxwell,
- and Christian Gilissen
Genome Res. September 2021 31: 1513-1518; Published in Advance July 23, 2021, doi:10.1101/gr.271809.120
..., Marchetti F, Yauk CL. 2019. Paternal exposure to benzo(a)pyrene induces -wide mutations in mouse offspring. Commun Biol 2: 228. doi:10.1038/s42003-019-0476-5 Dausset J, Cann H, Cohen D, Lathrop M, Lalouel JM, White R. 1990. Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping ...
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Method: Simulation of nanopore sequencing signal data with tunable parameters
- Hasindu Gamaarachchi,
- James M. Ferguson,
- Hiruna Samarakoon,
- Kisaru Liyanage,
- and Ira W. Deveson
Genome Res. May 2024 34: 778-783; Published in Advance May 1, 2024, doi:10.1101/gr.278730.123
...Bioinformatics 21: 343. doi:10.1186/s12859-020-03697-x Gamaarachchi H, Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. 2022. Fast nanopore sequencing data analysis with SLOW5. Nat Biotechnol 40: 10261029. doi:10.1038/s41587-021-01147-4 Hafezqorani S ...
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Method: Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome
- Dal-Hoe Koo,
- Fangpu Han,
- James A. Birchler,
- and Jiming Jiang
Genome Res. June 2011 21: 908-914; Published in Advance April 25, 2011, doi:10.1101/gr.116202.110
..., Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SIS. 2005. Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast . Nat Genet 37: 809819. Cheng ZK, Stupar RM, Gu MH, Jiang JM. 2001. A tandemly repeated DNA sequence is associated with both knob ...

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