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Method: The origin, global distribution, and functional impact of the human 8p23 inversion polymorphism
- Maximilian P.A. Salm,
- Stuart D. Horswell,
- Claire E. Hutchison,
- Helen E. Speedy,
- Xia Yang,
- Liming Liang,
- Eric E. Schadt,
- William O. Cookson,
- Anthony S. Wierzbicki,
- Rossi P. Naoumova,
- and Carol C. Shoulders
Genome Res. June 2012 22: 1144-1153; Published in Advance March 7, 2012, doi:10.1101/gr.126037.111
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Research: Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration
- Kyoungmi Kim,
- Sung Wook Park,
- Jin Hyoung Kim,
- Seung Hwan Lee,
- Daesik Kim,
- Taeyoung Koo,
- Kwang-eun Kim,
- Jeong Hun Kim,
- and Jin-Soo Kim
Genome Res. March 2017 27: 419-426; Published in Advance February 16, 2017, doi:10.1101/gr.219089.116
...-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics 30: 14731475. Calcedo R, Franco J, Qin Q, Richardson DW, Mason JB, Boyd S, Wilson JM. 2015. Preexisting neutralizing antibodies to adeno-associated virus capsids in large animals ...
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Perspective: Human genomic disease variants: A neutral evolutionary explanation
- Joel T. Dudley,
- Yuseob Kim,
- Li Liu,
- Glenn J. Markov,
- Kristyn Gerold,
- Rong Chen,
- Atul J. Butte,
- and Sudhir Kumar
Genome Res. August 2012 22: 1383-1394; Published in Advance June 4, 2012, doi:10.1101/gr.133702.111
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Method: A probabilistic method for testing and estimating selection differences between populations
- Yungang He,
- Minxian Wang,
- Xin Huang,
- Ran Li,
- Hongyang Xu,
- Shuhua Xu,
- and Li Jin
Genome Res. December 2015 25: 1903-1909; Published in Advance October 13, 2015, doi:10.1101/gr.192336.115
...gain? Eur J Hum Genet 9: 291300. Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a highdensity SNP map for signatures of natural selection. Genome Res 12: 18051814. Bagos PG. 2012. On the covariance of two correlated log-odds ratios. Stat Med 31: 14181431. Basu Mallick C, Iliescu ...
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INSIGHT/OUTLOOK: Acquisition and Metastability of Centromere Identity and Function: Sequence Analysis of a Human Neocentromere
- Keith A. Maggert and
- Gary H. Karpen
Genome Res. June 1, 2000 10: 725-728; doi:10.1101/gr.10.6.725
.... . Barry A.E. , Howman E.V. , Cancilla M.R. , Saffery R. , Choo K.H.A. ( 1999 ) Hum. Mol. Genet. 8 : 217 227 . Biessman H. , Carter S.B. , Mason J.M. ( 1990 ) PNAS 87 : 1758 1761 . Cavalli G. , Paro R. ( 1998 ) Curr. Opin. Cell Biol. 10 : 354 60 . Choo K.H.A. ( 1997 ) Amer. J. Hum. Genet. 61 ...
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Resource: Copy number variation of individual cattle genomes using next-generation sequencing
- Derek M. Bickhart,
- Yali Hou,
- Steven G. Schroeder,
- Can Alkan,
- Maria Francesca Cardone,
- Lakshmi K. Matukumalli,
- Jiuzhou Song,
- Robert D. Schnabel,
- Mario Ventura,
- Jeremy F. Taylor,
- Jose Fernando Garcia,
- Curtis P. Van Tassell,
- Tad S. Sonstegard,
- Evan E. Eichler,
- and George E. Liu
Genome Res. April 2012 22: 778-790; Published in Advance February 2, 2012, doi:10.1101/gr.133967.111
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Research: Selective maternal seeding and environment shape the human gut microbiome
- Katri Korpela,
- Paul Costea,
- Luis Pedro Coelho,
- Stefanie Kandels-Lewis,
- Gonneke Willemsen,
- Dorret I. Boomsma,
- Nicola Segata,
- and Peer Bork
Genome Res. April 2018 28: 561-568; Published in Advance March 1, 2018, doi:10.1101/gr.233940.117
...Gastroenterol Nutr 60: 294307. The Human Microbiome Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486: 207214. Jimnez E, Delgado S, Maldonado A, Arroyo R, Albjar M, Garca N, Jariod M, Fernndez L, Gmez A, Rodrguez JM. 2008. Staphylococcus ...
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Resource: A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
- Bo Wang,
- Michael Regulski,
- Elizabeth Tseng,
- Andrew Olson,
- Sara Goodwin,
- W. Richard McCombie,
- and Doreen Ware
Genome Res. June 2018 28: 921-932; Published in Advance April 30, 2018, doi:10.1101/gr.227462.117
...FS, Krieg DR. 1992. Osmotic adjustment in sorghum. I. Mechanisms of diurnal osmotic potential changes. Plant Physiol 99: 577582. Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peagaricano F, Lindquist E, Pedraza MA, Barry K, et al. 2014. Insights into the maize pan ...
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Research: Heritability and genetic basis of protein level variation in an outbred population
- Leopold Parts,
- Yi-Chun Liu,
- Manu M. Tekkedil,
- Lars M. Steinmetz,
- Amy A. Caudy,
- Andrew G. Fraser,
- Charles Boone,
- Brenda J. Andrews,
- and Adam P. Rosebrock
Genome Res. August 2014 24: 1363-1370; Published in Advance May 13, 2014, doi:10.1101/gr.170506.113
...localization in budding yeast. Nature 425: 686691. Johansson A, Enroth S, Palmblad M, Deelder AM, Bergquist J, Gyllensten U. 2013. Identification of genetic variants influencing the human plasma proteome. Proc Natl Acad Sci 110: 46734678. Keurentjes JJ, Fu J, Terpstra IR, Garcia JM, van den Ackerveken G ...
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Research: Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor
- Brennan Decker,
- Brian W. Davis,
- Maud Rimbault,
- Adrienne H. Long,
- Eric Karlins,
- Vidhya Jagannathan,
- Rebecca Reiman,
- Heidi G. Parker,
- Cord Drögemüller,
- Jason J. Corneveaux,
- Erica S. Chapman,
- Jeffery M. Trent,
- Tosso Leeb,
- Matthew J. Huentelman,
- Robert K. Wayne,
- Danielle M. Karyadi,
- and Elaine A. Ostrander
Genome Res. November 2015 25: 1646-1655; Published in Advance July 31, 2015, doi:10.1101/gr.190314.115
..., Biankin AV, Bignell GR, Bolli N, Borg A, Brresen-Dale AL, et al. 2013. Signatures of mutational processes in human cancer. Nature 500: 415421. Axelsson E, Ratnakumar A, ArendtML,Maqbool K,WebsterMT, PerloskiM, Liberg O, Arnemo JM, Hedhammar A, Lindblad-Toh K. 2013. The genomic signature of dog ...
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