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  1. Mini-Review: Toward telomere-to-telomere cat genomes for precision medicine and conservation biology
    • William J. Murphy and
    • Andrew J. Harris
    Genome Res. May 2024 34: 655-664; Published in Advance June 7, 2024, doi:10.1101/gr.278546.123
    ...Bredemeyer KR, Hillier L, Harris AJ, Hughes GM, Foley NM, Lawless C, Carroll RA, Storer JM, Batzer MA, Rice ES, et al. 2023. Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution. Nat Genet 55: 19531963. doi:10.1038/s41588-023-01548-y ...
  2. Research: Dynamic evolution of satellite DNAs drastically differentiates the genomes of Tribolium sibling species
    • Damira Veseljak,
    • Evelin Despot-Slade,
    • Marin Volarić,
    • Lucija Horvat,
    • Tanja Vojvoda Zeljko,
    • Nevenka Meštrović,
    • and Brankica Mravinac
    Genome Res. November 2025 35: 2445-2460; Published in Advance September 16, 2025, doi:10.1101/gr.280516.125
  3. Research: Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
    • Shuhei Mitsutomi,
    • Anzu Sugawara,
    • Masahide Seki,
    • Yutaka Suzuki,
    • Sotaro Miyao,
    • Haozhe Du,
    • Kenji Takahashi,
    • Yusuke Mizukami,
    • Kenzui Taniue,
    • and Nobuyoshi Akimitsu
    Genome Res. November 2025 35: 2406-2417; Published in Advance October 30, 2025, doi:10.1101/gr.280269.124
  4. Research: De novo rates and selection of large copy number variation
    • Andy Itsara,
    • Hao Wu,
    • Joshua D. Smith,
    • Deborah A. Nickerson,
    • Isabelle Romieu,
    • Stephanie J. London,
    • and Evan E. Eichler
    Genome Res. November 2010 20: 1469-1481; Published in Advance September 14, 2010, doi:10.1101/gr.107680.110
  5. Methods: Region-specific detection of neuroblastoma loss of heterozygosity at multiple loci simultaneously using a SNP-based tag-array platform
    • John M. Maris,
    • George Hii,
    • Craig A. Gelfand,
    • Shobha Varde,
    • Peter S. White,
    • Eric Rappaport,
    • Saul Surrey,
    • and Paolo Fortina
    Genome Res. August 2005 15: 1168-1176; doi:10.1101/gr.3865305
    ...-6905. Accepted May 17, 2005. Received February 22, 2005. Cold Spring Harbor Laboratory Press S Varde PeterS White George, Hii Saul Surrey John M, Maris Maris John M. Maris, JM Gelfand, C Maris Surrey, Saul John M Maris Rappaport John P White PS White George Hii J Maris Gelfand Varde, S ...
  6. Research: Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila
    • Marcin von Grotthuss,
    • Michael Ashburner,
    • and José M. Ranz
    Genome Res. August 2010 20: 1084-1096; Published in Advance July 2, 2010, doi:10.1101/gr.103713.109
    ...Michael JM Ranz Ranz von Jos M Ranz, J.M Ranz Jos M. Grotthuss Ranz, Jos M von Grotthuss Marcin M Ashburner Jose JosM Ranz J.M. Ranz Michael, Ashburner J Ranz von Grotthuss, Marcin Michael Ashburner, Michael Ranz, JM von Grotthuss von Grotthuss, M Jos Ranz Marcin von Grotthuss Ranz, J Ashburner, M ...
  7. Resource: A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
    • Christopher L. Plaisier,
    • Min Pan,
    • and Nitin S. Baliga
    Genome Res. November 2012 22: 2302-2314; Published in Advance June 28, 2012, doi:10.1101/gr.133991.111
    OPEN ACCESS ARTICLE
  8. Method: Discovery and assessment of conserved Pax6 target genes and enhancers
    • Pedro Coutinho,
    • Sofia Pavlou,
    • Shipra Bhatia,
    • Kevin J. Chalmers,
    • Dirk A. Kleinjan,
    • and Veronica van Heyningen
    Genome Res. August 2011 21: 1349-1359; Published in Advance May 26, 2011, doi:10.1101/gr.124115.111
  9. Perspective: What does our genome encode?
    • John A. Stamatoyannopoulos
    Genome Res. September 2012 22: 1602-1611; doi:10.1101/gr.146506.112
    OPEN ACCESS ARTICLE
  10. Research: High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    • Zhen Shi,
    • Taiowa A. Montgomery,
    • Yan Qi,
    • and Gary Ruvkun
    Genome Res. March 2013 23: 497-508; Published in Advance January 30, 2013, doi:10.1101/gr.149112.112
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