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Method: A new compression strategy to reduce the size of nanopore sequencing data
- Kavindu Jayasooriya,
- Sasha P. Jenner,
- Pasindu Marasinghe,
- Udith Senanayake,
- Hassaan Saadat,
- David Taubman,
- Roshan Ragel,
- Hasindu Gamaarachchi,
- and Ira W. Deveson
Genome Res. July 2025 35: 1574-1582; Published in Advance May 15, 2025, doi:10.1101/gr.280090.124
..., Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. 2022. Fast nanopore sequencing data analysis with SLOW5. Nat Biotechnol 40: 10261029. doi:10.1038/s41587-021-01147-4 Gamaarachchi H, Ferguson JM, Samarakoon H, Liyanage K, Deveson IW. 2024. Simulation ...
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ARTICLES: A simple and rapid DNA microextraction method for plant, animal, and insect suitable for RAPD and other PCR analyses.
- W Y Cheung,
- N Hubert,
- and B S Landry
Genome Res. August 1993 3: 69-70
...dehydrated plant tissue. Plant Mol Biol. Rep. 8 : 297 303 . 2.. Edwards, K., , Johnstone, C. , Thompson. C. Edwards, K., Johnstone, C. and Thompson. C. 1991 . A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res. 19 : 1349 . 3.. Deragon, J.M. , Landry. B ...
REVIEW: Microfabrication technologies for integrated nucleic acid analysis.
- D T Burke,
- M A Burns,
- and C Mastrangelo
Genome Res. March 1997 7: 189-197; doi:10.1101/gr.7.3.189
...@umich.edu Footnotes Copyright Cold Spring Harbor Laboratory Press References Adams, M.D., , Kerlavage, A.R. , Kelly, J.M. , Gocayne, J.D. , Fields, C. , Fraser, C.M. , Venter. J.C. Adams, M.D., Kerlavage, A.R. Kelly, J.M. Gocayne, J.D. Fields, C. Fraser, C.M. and Venter. J.C. 1994 . A model for high ...
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Resource: A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality
- Jane Hawkey,
- Ben Vezina,
- Jonathan M. Monk,
- Louise M. Judd,
- Taylor Harshegyi,
- Sebastián López-Fernández,
- Carla Rodrigues,
- Sylvain Brisse,
- Kathryn E. Holt,
- and Kelly L. Wyres
Genome Res. May 2022 32: 1004-1014; Published in Advance March 11, 2022, doi:10.1101/gr.276289.121
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Mini-Review: Large-scale genomic analysis of the domestic dog informs biological discovery
- Reuben M. Buckley and
- Elaine A. Ostrander
Genome Res. June 2024 34: 811-821; Published in Advance July 2, 2024, doi:10.1101/gr.278569.123
...M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J, et al. 2020. Progressive Cactus is a multiple- aligner for the thousand- era. Nature 587: 246251. doi:10.1038/s41586-020-2871-y Auton A, Rui Li Y, Kidd J, Oliveira K, Nadel J, Holloway JK, Hayward JJ, Cohen PE, Greally JM, Wang J ...
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Research: High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
- Houssam Hajjoul,
- Julien Mathon,
- Hubert Ranchon,
- Isabelle Goiffon,
- Julien Mozziconacci,
- Benjamin Albert,
- Pascal Carrivain,
- Jean-Marc Victor,
- Olivier Gadal,
- Kerstin Bystricky,
- and Aurélien Bancaud
Genome Res. November 2013 23: 1829-1838; Published in Advance September 27, 2013, doi:10.1101/gr.157008.113
...simulations T 300 K ks 1 kcal mol 1 nm2 Rmin 7 nm U 0.01 kcal mol1 mn 10 a.u. bn 10 a.u. E1 0.01 kcal mol 1 nm4 Hajjoul et al. 1836 Genome Research www..org Acknowledgments We thank theUniversity Paul Sabatier for Ph.D. fellowship funding (to J.M.). This work was partly supported by the ANR program JC08 ...
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Research: Discovery and genotyping of structural variation from long-read haploid genome sequence data
- John Huddleston,
- Mark J.P. Chaisson,
- Karyn Meltz Steinberg,
- Wes Warren,
- Kendra Hoekzema,
- David Gordon,
- Tina A. Graves-Lindsay,
- Katherine M. Munson,
- Zev N. Kronenberg,
- Laura Vives,
- Paul Peluso,
- Matthew Boitano,
- Chen-Shin Chin,
- Jonas Korlach,
- Richard K. Wilson,
- and Evan E. Eichler
Genome Res. May 2017 27: 677-685; Published in Advance November 28, 2016, doi:10.1101/gr.214007.116
....0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.References The 1000 Genomes Project Consortium. 2015. A global reference for human genetic variation. Nature 526: 6874. Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O ...
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Resource: H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa
- Nicola J. Mulder,
- Ezekiel Adebiyi,
- Raouf Alami,
- Alia Benkahla,
- James Brandful,
- Seydou Doumbia,
- Dean Everett,
- Faisal M. Fadlelmola,
- Fatima Gaboun,
- Simani Gaseitsiwe,
- Hassan Ghazal,
- Scott Hazelhurst,
- Winston Hide,
- Azeddine Ibrahimi,
- Yasmina Jaufeerally Fakim,
- C. Victor Jongeneel,
- Fourie Joubert,
- Samar Kassim,
- Jonathan Kayondo,
- Judit Kumuthini,
- Sylvester Lyantagaye,
- Julie Makani,
- Ahmed Mansour Alzohairy,
- Daniel Masiga,
- Ahmed Moussa,
- Oyekanmi Nash,
- Odile Ouwe Missi Oukem-Boyer,
- Ellis Owusu-Dabo,
- Sumir Panji,
- Hugh Patterton,
- Fouzia Radouani,
- Khalid Sadki,
- Fouad Seghrouchni,
- Özlem Tastan Bishop,
- Nicki Tiffin,
- Nzovu Ulenga,
- and The H3ABioNet Consortium
Genome Res. February 2016 26: 271-277; Published in Advance December 1, 2015, doi:10.1101/gr.196295.115
...by the NIH for the bioinformatics network, some research has been necessary, such as development of new algorithms, visualization tools, and workflows relevant to genomic analysis of African populations. Specific examples include the development of a job management system (JMS), a structural analysis ...
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Commentary: Decoding the human genome
- Kelly A. Frazer
Genome Res. September 2012 22: 1599-1601; doi:10.1101/gr.146175.112
...of transcription factor binding data. Genome Res (this issue). doi: 10.1101/gr.136838.111. Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF, Kellis M, Lindblad-Toh K, Lander ES. 2007. Distinguishing protein-coding andnoncoding genes in the human . Proc Natl Acad Sci 104: 1942819433. Claverie JM. 2001. Gene number ...
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Corrigendum: Corrigendum: Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes
- Pierre Chymkowitch,
- Aurélie Nguéa P,
- Håvard Aanes,
- Christian J. Koehler,
- Bernd Thiede,
- Susanne Lorenz,
- Leonardo A. Meza-Zepeda,
- Arne Klungland,
- and Jorrit M. Enserink
Genome Res. February 2017 27: 334; doi:10.1101/gr.218370.116
...Lorenz, S Leonardo A Enserink, Jorrit M Pierre Jorrit M Enserink Arne Klungland Meza-Zepeda, L Jorrit M Leonardo A MezaZepeda J Enserink Leonardo Meza-Zepeda Bernd Thiede Hvard A P CJ Koehler Pierre Chymkowitch Enserink, JM Chymkowitch Pierre Arne, Klungland P, A.N Lorenz Lorenz, Susanne Klungland Arne ...
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