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Resource: A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq
- Sophia C. Gaynor-Gillett,
- Lijun Cheng,
- Manman Shi,
- Jason Liu,
- Gaoyuan Wang,
- Megan Spector,
- Qiuyu Guo,
- Le Qi,
- Mary Flaherty,
- Martha Wall,
- Ahyeon Hwang,
- Mengting Gu,
- Zhanlin Chen,
- Yuhang Chen,
- PsychENCODE Consortium,
- Jennifer R. Moran,
- Jing Zhang,
- Donghoon Lee,
- Mark Gerstein,
- Daniel Geschwind,
- and Kevin P. White
Genome Res. August 2025 35: 1887-1901; Published in Advance July 11, 2025, doi:10.1101/gr.279584.124
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Research: The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression
- Colin D. Meiklejohn,
- Joseph D. Coolon,
- Daniel L. Hartl,
- and Patricia J. Wittkopp
Genome Res. January 2014 24: 84-95; Published in Advance September 16, 2013, doi:10.1101/gr.156414.113
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LETTER: A collection of 1814 human chromosome 7-specific STSs.
- G G Bouffard,
- L M Iyer,
- J R Idol,
- V V Braden,
- A F Cunningham,
- L A Weintraub,
- R M Mohr-Tidwell,
- D C Peluso,
- R S Fulton,
- M P Leckie,
- and E D Green
Genome Res. January 1997 7: 59-64; doi:10.1101/gr.7.1.59
...of chromosome 22: Localization of 587 yeast artificial chromosomes with 238 mapped markers. Hum. Mol. Genet. 4 : 59 69 . Berry, R., , Stevens, T.J. , Walter, N.A.R. , Wilcox, A.S. , Rubano, T. , Hopkins, J.A. , Weber, J. , Goold, R. , Soares, M.B. , Sikela. J.M. Berry, R., Stevens, T.J. Walter, N.A.R. Wilcox ...
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Research: Adaptive selection of an incretin gene in Eurasian populations
- Chia Lin Chang,
- James J. Cai,
- Chiening Lo,
- Jorge Amigo,
- Jae-Il Park,
- and Sheau Yu Teddy Hsu
Genome Res. January 2011 21: 21-32; Published in Advance October 26, 2010, doi:10.1101/gr.110593.110
...testing and data analyses. J.J.C., C.L., and J.A. processed and performed data analyses. The paper was written primarily by C.L.C., J.J.C., and S.Y.T.H. References Akey JM. 2009. Constructing genomic maps of positive selection in humans: Where do we go from here? Genome Res 19: 711722. Akey JM, Zhang G ...
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Research: Observation and prediction of recurrent human translocations mediated by NAHR between nonhomologous chromosomes
- Zhishuo Ou,
- Paweł Stankiewicz,
- Zhilian Xia,
- Amy M. Breman,
- Brian Dawson,
- Joanna Wiszniewska,
- Przemyslaw Szafranski,
- M. Lance Cooper,
- Mitchell Rao,
- Lina Shao,
- Sarah T. South,
- Karlene Coleman,
- Paul M. Fernhoff,
- Marcel J. Deray,
- Sally Rosengren,
- Elizabeth R. Roeder,
- Victoria B. Enciso,
- A. Craig Chinault,
- Ankita Patel,
- Sung-Hae L. Kang,
- Chad A. Shaw,
- James R. Lupski,
- and Sau W. Cheung
Genome Res. January 2011 21: 33-46; doi:10.1101/gr.111609.110
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ARTICLE: Synthesis and characterization of 5'-fluorescent-dye-labeled oligonucleotides.
- W G Giusti and
- T Adriano
Genome Res. February 1993 2: 223-227; doi:10.1101/gr.2.3.223
..... Mayrand, P.E., , Corcoran, K.P. , Ziegle, J.S. , Robertson, J.M. , Hoff, L.B. , Kronick. M.N. Mayrand, P.E., Corcoran, K.P. Ziegle, J.S. Robertson, J.M. Hoff, L.B. and Kronick. M.N. 1992 . The use of fluorescence detection and internal lane standards to size PCR products automatically. Appl. Theoret ...
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ARTICLE: A sensitive, quantitative assay for measurement of allele-specific transcripts differing by a single nucleotide.
- J Singer-Sam,
- J M LeBon,
- A Dai,
- and A D Riggs
Genome Res. February 1992 1: 160-163; doi:10.1101/gr.1.3.160
...-1a transcript can be specifically detected even in a 1000-fold excess of RNA containing the Pgk-1b transcript. Footnotes Copyright Cold Spring Harbor Laboratory Press A, Dai Riggs LeBon, JM J SingerSam LeBon, J M J M LeBon J M Riggs, A.D J Singer-Sam Riggs, A J M, LeBon J Le ...
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ARTICLE: The rat genome contains a p53 pseudogene: detection of a processed pseudogene using PCR.
- J E Hulla
Genome Res. May 1992 1: 251-254; doi:10.1101/gr.1.4.251
...reaction for revealing processed pseudogenes, and suggest that the pseudogene can be used as an internal control when amplifying the rat p53 gene. Footnotes Copyright Cold Spring Harbor Laboratory Press References 1. Nigro, J.M., , Baker, S.J. , Preisinger, A.C. , Jessup, J.M. , Hostetter, R. , Cleary, K ...
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ARTICLES: F-SSCP: fluorescence-based polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP) analysis.
- R Makino,
- H Yazyu,
- Y Kishimoto,
- T Sekiya,
- and K Hayashi
Genome Res. August 1992 2: 10-13; doi:10.1101/gr.2.1.10
...-strand conformation polymorphism analysis of polymerase chain reaction products. Oncogene 6 : 1313 1318 . 10.. Dauset, J., , Cann, H. , Cohen, D. , Lathrop, M. , LaLouel, J.-M. , White. R. Dauset, J., Cann, H. Cohen, D. Lathrop, M. LaLouel, J.-M. and White. R. 1990 . Centre d'Etude du Polymorphisme Humain (CEPH ...
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Resource: MPRAbase a Massively Parallel Reporter Assay database
- Jingjing Zhao,
- Fotis A Baltoumas,
- Maxwell A Konnaris,
- Ioannis Mouratidis,
- Zhe Liu,
- Jasmine Sims,
- Vikram Agarwal,
- Georgios A Pavlopoulos,
- Ilias Georgakopoulos-Soares,
- and Nadav Ahituv
Genome Res. April 22, 2025 gr.280387.124; Published in Advance April 22, 2025, doi:10.1101/gr.280387.124
...: 2333. Georgakopoulos-Soares I, Jain N, Gray JM, Hemberg M. 2017. MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments. Bioinformatics 33: 137 138. Georgakopoulos-Soares I, Victorino J, Parada GE, Agarwal V, Zhao J, Wong HY, Umar MI, Elor O, Muhwezi A, An J-Y, et ...
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