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Research: Characteristics of de novo structural changes in the human genome
- Wigard P. Kloosterman,
- Laurent C. Francioli,
- Fereydoun Hormozdiari,
- Tobias Marschall,
- Jayne Y. Hehir-Kwa,
- Abdel Abdellaoui,
- Eric-Wubbo Lameijer,
- Matthijs H. Moed,
- Vyacheslav Koval,
- Ivo Renkens,
- Markus J. van Roosmalen,
- Pascal Arp,
- Lennart C. Karssen,
- Bradley P. Coe,
- Robert E. Handsaker,
- Eka D. Suchiman,
- Edwin Cuppen,
- Djie Tjwan Thung,
- Mitch McVey,
- Michael C. Wendl,
- Genome of the Netherlands Consortium,
- André Uitterlinden,
- Cornelia M. van Duijn,
- Morris A. Swertz,
- Cisca Wijmenga,
- GertJan B. van Ommen,
- P. Eline Slagboom,
- Dorret I. Boomsma,
- Alexander Schönhuth,
- Evan E. Eichler,
- Paul I.W. de Bakker,
- Kai Ye,
- and Victor Guryev
Genome Res. June 2015 25: 792-801; Published in Advance April 16, 2015, doi:10.1101/gr.185041.114
...00001000644. Genome of the Netherlands Consortium CiscaWijmenga,20,21Morris A. Swertz,20,21,22 P. Eline Slagboom,23 Gert-Jan B. van Ommen,24 Cornelia M. van Duijn,25 Dorret I. Boomsma,26 Jasper A. Bovenberg,27 Anton J.M. de Craen,23 Marian Beekman,23 Albert Hofman,25 Gonneke Willemsen,26 Bruce Wolffenbuttel ...
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Method: Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
- Jared M. Peace,
- Sandra K. Villwock,
- John L. Zeytounian,
- Yan Gan,
- and Oscar M. Aparicio
Genome Res. March 2016 26: 365-375; Published in Advance January 4, 2016, doi:10.1101/gr.196857.115
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Research: A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
- Alexandros Bousios,
- Concepcion M. Diez,
- Shohei Takuno,
- Vojtech Bystry,
- Nikos Darzentas,
- and Brandon S. Gaut
Genome Res. February 2016 26: 226-237; Published in Advance December 2, 2015, doi:10.1101/gr.193763.115
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Method: A synergistic DNA logic predicts genome-wide chromatin accessibility
- Tatsunori Hashimoto,
- Richard I. Sherwood,
- Daniel D. Kang,
- Nisha Rajagopal,
- Amira A. Barkal,
- Haoyang Zeng,
- Bart J.M. Emons,
- Sharanya Srinivasan,
- Tommi Jaakkola,
- and David K. Gifford
Genome Res. October 2016 26: 1430-1440; Published in Advance July 25, 2016, doi:10.1101/gr.199778.115
...A synergistic DNA logic predicts genome-wide chromatin accessibility Tatsunori Hashimoto 1 , 3 , Richard I. Sherwood 2 , 3 , Daniel D. Kang 1 , 3 , Nisha Rajagopal 1 , Amira A. Barkal 1 , 2 , Haoyang Zeng 1 , Bart J.M ...
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Method: INTEGRATE: gene fusion discovery using whole genome and transcriptome data
- Jin Zhang,
- Nicole M. White,
- Heather K. Schmidt,
- Robert S. Fulton,
- Chad Tomlinson,
- Wesley C. Warren,
- Richard K. Wilson,
- and Christopher A. Maher
Genome Res. January 2016 26: 108-118; Published in Advance November 10, 2015, doi:10.1101/gr.186114.114
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Resource: Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum
- Alistair Miles,
- Zamin Iqbal,
- Paul Vauterin,
- Richard Pearson,
- Susana Campino,
- Michel Theron,
- Kelda Gould,
- Daniel Mead,
- Eleanor Drury,
- John O'Brien,
- Valentin Ruano Rubio,
- Bronwyn MacInnis,
- Jonathan Mwangi,
- Upeka Samarakoon,
- Lisa Ranford-Cartwright,
- Michael Ferdig,
- Karen Hayton,
- Xin-zhuan Su,
- Thomas Wellems,
- Julian Rayner,
- Gil McVean,
- and Dominic Kwiatkowski
Genome Res. September 2016 26: 1288-1299; Published in Advance August 16, 2016, doi:10.1101/gr.203711.115
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Research: Clonal copy-number mosaicism in autoreactive T lymphocytes in diabetic NOD mice
- Maha Alriyami,
- Luc Marchand,
- Quan Li,
- Xiaoyu Du,
- Martin Olivier,
- and Constantin Polychronakos
Genome Res. December 2019 29: 1951-1961; Published in Advance November 6, 2019, doi:10.1101/gr.247882.118
...is associated with depletion of integrin 47-positive T cells in blood. Hum Pathol 40: 699704. doi:10.1016/j.humpath.2008.10.014 Domingues RG, Lago-Baldaia I, Pereira-Castro I, Fachini JM, Oliveira L, Drpic D, Lopes N, Henriques T, Neilson JR, Carmo AM, et al. 2016. CD5 expression is regulated during human T ...
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Research: Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features
- Lisa Barros de Andrade e Sousa,
- Iris Jonkers,
- Laurène Syx,
- Ilona Dunkel,
- Julie Chaumeil,
- Christel Picard,
- Benjamin Foret,
- Chong-Jian Chen,
- John T. Lis,
- Edith Heard,
- Edda G. Schulz,
- and Annalisa Marsico
Genome Res. July 2019 29: 1087-1099; Published in Advance June 7, 2019, doi:10.1101/gr.245027.118
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Research: Pedigree-based estimation of human mobile element retrotransposition rates
- Julie Feusier,
- W. Scott Watkins,
- Jainy Thomas,
- Andrew Farrell,
- David J. Witherspoon,
- Lisa Baird,
- Hongseok Ha,
- Jinchuan Xing,
- and Lynn B. Jorde
Genome Res. October 2019 29: 1567-1577; doi:10.1101/gr.247965.118
....01.019 Damert A, Raiz J, Horn AV, Lwer J, Wang H, Xing J, Batzer MA, Lwer R, Schumann GG. 2009. 5-Transducing SVA retrotransposon groups spread efficiently throughout the human . Genome Res 19: 19922008. doi:10.1101/gr.093435.109 Dausset J, Cann H, Cohen D, Lathrop M, Lalouel JM, White R. 1990. Centre d ...
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Method: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals
- Keisha D. Carlson,
- Peter H. Sudmant,
- Maximilian O. Press,
- Evan E. Eichler,
- Jay Shendure,
- and Christine Queitsch
Genome Res. May 2015 25: 750-761; Published in Advance February 6, 2015, doi:10.1101/gr.182212.114

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