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Resource: Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level
- Wankun Deng,
- Citu Citu,
- Andi Liu,
- and Zhongming Zhao
Genome Res. October 2024 34: 1687-1699; Published in Advance October 18, 2024, doi:10.1101/gr.279363.124
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Research: Stable genome structures in living fossil fishes
- Cheng Wang,
- Chase D. Brownstein,
- Wenjun Chen,
- Zufa Ding,
- Dan Yu,
- Yu Deng,
- Chenguang Feng,
- Thomas J. Near,
- Shunping He,
- and Liandong Yang
Genome Res. February 2026 36: 318-329; Published in Advance January 13, 2026, doi:10.1101/gr.280800.125
REVIEW: Lessons learned, promises kept: a biologist's eye view of the Genome Project.
- S M Tilghman
Genome Res. September 1996 6: 773-780; doi:10.1101/gr.6.9.773
...segment number and polarity in Drosophila. Nature 287 : 795 801 . Perry, W.L., , III, , Vasicek, T.J. , Lee, J.J. , Rossi, J.M. , Zeng, L. , Zhang, T. , Tilghman, S.M. , Costantini. F. Perry, W.L., , III, Vasicek, T.J. Lee, J.J. Rossi, J.M. Zeng, L. Zhang, T. Tilghman, S.M. and Costantini. F. 1995 ...
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Research: Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells
- Mira T. Kassouf,
- Jim R. Hughes,
- Stephen Taylor,
- Simon J. McGowan,
- Shamit Soneji,
- Angela L. Green,
- Paresh Vyas,
- and Catherine Porcher
Genome Res. August 2010 20: 1064-1083; Published in Advance June 21, 2010, doi:10.1101/gr.104935.110
ARTICLE: Inhibitory effect of salivary fluids on PCR: potency and removal.
- A S Ochert,
- A W Boulter,
- W Birnbaum,
- N W Johnson,
- and C G Teo
Genome Res. June 1994 3: 365-368
.... Microbiol. 28 : 1300 1307 . 7.. Jiang, X., , Wang, J. , Graham, D.Y. , Estes. M.K. Jiang, X., Wang, J. Graham, D.Y. and Estes. M.K. 1992 . Detection of Norwalk virus in stool by polymerase chain reaction. J. Clin. Microbiol. 30 : 2529 2534 . 8.. Gimprel, E., , Sanchez, P.J. , Wendel, G.D. , Burstain, J.M ...
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ARTICLES: Detection of the most common mutations causing beta-thalassemia in Mediterraneans using a multiplex amplification refractory mutation system (MARMS).
- P Fortina,
- G Dotti,
- R Conant,
- G Monokian,
- T Parrella,
- W Hitchcock,
- E Rappaport,
- E Schwartz,
- and S Surrey
Genome Res. November 1992 2: 163-166; doi:10.1101/gr.2.2.163
..... Ballabio, A., , Gibbs, R.A. , Caskey. C.T. Ballabio, A., Gibbs, R.A. and Caskey. C.T. 1990 . PCR test for cystic fibrosis deletion. Nature 243 : 220 . 11.. Old, J.M., , Varawalla, N.Y. , Weatherall. D.J. Old, J.M., Varawalla, N.Y. and Weatherall. D.J. 1990 . Rapid detection and prenatal diagnosis of ...
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Method: A flexible method for estimating the fraction of fitness influencing mutations from large sequencing data sets
- Sunjin Moon and
- Joshua M. Akey
Genome Res. June 2016 26: 834-843; Published in Advance April 14, 2016, doi:10.1101/gr.203059.115
...249. Akey JM. 2009. Constructing genomic maps of positive selection in humans: Where do we go from here? Genome Res 19: 711722. Amberger JS, Bocchini CA, Schiettecatte F, Scott AF, Hamosh A. 2015. OMIM.org: Online Mendelian Inheritance in Man (OMIM), an online catalog of human genes and genetic disorders ...
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Method: Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics
- David C. Danko,
- Dmitry Meleshko,
- Daniela Bezdan,
- Christopher Mason,
- and Iman Hajirasouliha
Genome Res. January 2019 29: 116-124; Published in Advance December 6, 2018, doi:10.1101/gr.235499.118
...long-read circular consensus sequence data. Sci Rep 6: 25373. doi:10.1038/srep25373 Girvan M, Newman MEJ. 2002. Community structure in social and biological networks. Proc Natl Acad Sci 99: 78217826. doi:10.1073/pnas.122653799 Greer SU, Nadauld LD, Lau BT, Chen J, Wood-Bouwens C, Ford JM, Kuo CJ, Ji ...
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Research: Gene duplication and genetic innovation in cereal genomes
- Hui Guo,
- Yuannian Jiao,
- Xu Tan,
- Xiyin Wang,
- Xianzhong Huang,
- Huizhe Jin,
- and Andrew H. Paterson
Genome Res. February 2019 29: 261-269; Published in Advance January 16, 2019, doi:10.1101/gr.237511.118
...cyclicality to angiosperm duplication. Proc Natl Acad Sci 103: 27302735. doi:10.1073/pnas.0507782103 Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, et al. 2012. Maize HapMap2 identifies extant variation from a in flux. Nat Genet 44: 803807. doi:10 ...
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Resource: GenomeVIP: a cloud platform for genomic variant discovery and interpretation
- R. Jay Mashl,
- Adam D. Scott,
- Kuan-lin Huang,
- Matthew A. Wyczalkowski,
- Christopher J. Yoon,
- Beifang Niu,
- Erin DeNardo,
- Venkata D. Yellapantula,
- Robert E. Handsaker,
- Ken Chen,
- Daniel C. Koboldt,
- Kai Ye,
- David Fenyö,
- Benjamin J. Raphael,
- Michael C. Wendl,
- and Li Ding
Genome Res. August 2017 27: 1450-1459; Published in Advance May 18, 2017, doi:10.1101/gr.211656.116
...specificity and sensitivity. BMC Bioinformatics 15: 104. Chang CC, Chow CC, Tellier LCAM, Vattikuti S, Purcell SM, Lee JJ. 2015. Second-generation PLINK: rising to the challenge of larger and richer datasets. GigaScience 4: 7. Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl ...

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